Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2541 ATGGCTTCCCTCGATTGCCATCAAATTTCACTCACAACACACACTTTCACACACAGAGACACCATGTATTCCAGCAATGCAACAAGCAGCAGCAGAGGCTCTTCGGGAACGGGTCGGTACCGTGGAGTGAGGCGTAGGAGCAGCGGAAAATGGGTGTCTGAGATTCGTGAGCCTAAGAAGCCTAACCGAATTTGGTTGGGCACGTTTCCTACCCCGGAAATGGCCGCGGTGGCCTATGACGTGGCAGCGTTTGCTCTTAAGGGTAAGGATGCCGAGCTCAACTTCCCCGACTCCGCTTCTTCGCTTCCTGTCCCAGCTTCACTCTCCGCGCGTGACATTCAGGTGGCTGCAGCGGCGGCGGCGGCCGCTGCTGGAGCAGCGAAGGATGCTATGCGAACGCAGACAGGGAATTATAACTTTTCAGGGCGCAAGAGAACCAAACCGGGACGAGTAACCAGTTTGTGGATGAGGATTTGA 477 0.5535 MASLDCHQISLTTHTFTHRDTMYSSNATSSSRGSSGTGRYRGVRRRSSGKWVSEIREPKKPNRIWLGTFPTPEMAAVAYDVAAFALKGKDAELNFPDSASSLPVPASLSARDIQVAAAAAAAAAGAAKDAMRTQTGNYNFSGRKRTKPGRVTSLWMRI 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2541 158 SMART rav1_2 39 102 IPR001471 GO:0003700|GO:0006355
Ssu7g2541 158 PRINTS Ethylene responsive element binding protein signature 78 98 IPR001471 GO:0003700|GO:0006355
Ssu7g2541 158 PRINTS Ethylene responsive element binding protein signature 40 51 IPR001471 GO:0003700|GO:0006355
Ssu7g2541 158 Gene3D AP2/ERF domain 38 97 IPR036955 GO:0003700|GO:0006355
Ssu7g2541 158 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF024 22 137 - -
Ssu7g2541 158 MobiDBLite consensus disorder prediction 23 52 - -
Ssu7g2541 158 MobiDBLite consensus disorder prediction 23 37 - -
Ssu7g2541 158 CDD AP2 40 98 IPR001471 GO:0003700|GO:0006355
Ssu7g2541 158 ProSiteProfiles AP2/ERF domain profile. 39 96 IPR001471 GO:0003700|GO:0006355
Ssu7g2541 158 Pfam AP2 domain 39 88 IPR001471 GO:0003700|GO:0006355
Ssu7g2541 158 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 22 137 - -
Ssu7g2541 158 SUPERFAMILY DNA-binding domain 39 98 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2541 Ssu-Chr7 49907287 49908209 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2541 40 121 AP2-EREBP Transcription Factor Family AT5G25810 71.951 1.03e-35 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ssu7g2541 AP2 4.3e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2541 - - pvu:PHAVU_007G222600g 206.453
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g2541 7 49907287 49908209 Ssu7g2541 7 49907287 49908209 ECH
Ssu4g0898 4 14189959 14191500 Ssu7g2541 7 49907287 49908209 PCT