Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2538 ATGGCTGAAGAACATGGATATCAAAGGAGTGGGAAAAAGTGCAGGGAGAAGTTTGAGAATTTGTACAAATATTACAAGAAGACAAAGGAAGGTAAGGCAGGAAGACATGATGGGAAGCATTACAGATTCTTTCGTCAACTTGAAGCCTTATATGGAGATAACAGTAACACAGTTTCAGTCCCGGAAACCAATGTTGTTAGCAGCATTCATTTTCAGGCAAGCAGCCACGCCCCCTCCCAAACAAATCAAGACAAGTTTCAGTCTCACAGTAATAAGCATTGTGATAGCCTCAGCCTCACTAACTCCACTAACTTTGACACATCATCATCTGATGATGATGACAATGATCATAGCATGGAGAATGAGTCCATGGAGAagaggagaaagaggaagagtGGGAGAAGTTGTAAGGTGAAGATAAAAGACTTCATTGACTCACAGATGAGGAAGATGGTGGATAAGCAAAAGGAGTGGTTGGATAAACTGGTGAAGACACtggaagagaaggaaaaggaaaggatgCTAAGAGAGGAGGAGTGGAGGAAGCAAGAGGCAAACAGGTTAGAGAGGGAGCAAAAGTTTTGGGCTAAAGAGAGAGCATGGATTGAAGCCAGGGATGCTGCTCTAATGGAGGCTTTGCAAAAGTTAACTGGAAGAGAAATAATGAAGGCTGAAACTCCTGAGGGTATAAATGTAATGGCAGCAGAAGTTCAAAATCACAGTGAAAACCAGAATAATGAAGAAGGAAGTGAAATCTTAAACAGCAATACTGTCATCAGAGGTGCTGATAGCTGGCCAGAATCTGAGATTGCAAAGCTTCAACAGTTGAGAGCTGAGGTCGAGACAAGGTTTCCATATAGTGAAATTTCAGAAGATGTTACATGGGAGGTAGTAGCAACCAAAATGGCCTGTTTTGGCTACGAAAGGAGTGCTTTGATGTGCAAAGACAAATGGGAAAGTATCAGTAACTATCCAAGGGAGGATAACAAGGAAGGGAACAAGAAGCGCAAGGAAAACTCTAGAAGCTGCTTTTACATCAAGAACAATGATGATCAACAATCTTCCCTATACGATCAAGGAAGTGCCTATTGTGATGATGATATCAATGATCAAAGGCAGGAGAATGAGAGGCTACAAACAAATGATGGTTCTTCACCTTCAAAATCCAATGTTGGAAATGTTGCTCCCGCTGATAGTTGCTGTCCCTTCTTGATGAGTACTGAGGGTGGAAACTTGTGGGAGAACTATGGCTTAAAGCTCAATAATGCAAACCAAAACCGCTGA 1284 0.4042 MAEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGRHDGKHYRFFRQLEALYGDNSNTVSVPETNVVSSIHFQASSHAPSQTNQDKFQSHSNKHCDSLSLTNSTNFDTSSSDDDDNDHSMENESMEKRRKRKSGRSCKVKIKDFIDSQMRKMVDKQKEWLDKLVKTLEEKEKERMLREEEWRKQEANRLEREQKFWAKERAWIEARDAALMEALQKLTGREIMKAETPEGINVMAAEVQNHSENQNNEEGSEILNSNTVIRGADSWPESEIAKLQQLRAEVETRFPYSEISEDVTWEVVATKMACFGYERSALMCKDKWESISNYPREDNKEGNKKRKENSRSCFYIKNNDDQQSSLYDQGSAYCDDDINDQRQENERLQTNDGSSPSKSNVGNVAPADSCCPFLMSTEGGNLWENYGLKLNNANQNR 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2538 427 PANTHER TRIHELIX TRANSCRIPTION FACTOR PTL 1 417 - -
Ssu7g2538 427 MobiDBLite consensus disorder prediction 74 134 - -
Ssu7g2538 427 Pfam Myb/SANT-like DNA-binding domain 263 344 IPR044822 -
Ssu7g2538 427 Pfam Myb/SANT-like DNA-binding domain 3 50 IPR044822 -
Ssu7g2538 427 MobiDBLite consensus disorder prediction 110 129 - -
Ssu7g2538 427 PANTHER - 1 417 - -
Ssu7g2538 427 Coils Coil 152 179 - -
Ssu7g2538 427 ProSiteProfiles Myb-like domain profile. 264 322 IPR001005 -
Ssu7g2538 427 MobiDBLite consensus disorder prediction 74 108 - -
Ssu7g2538 427 Gene3D - 265 326 - -
Ssu7g2538 427 Gene3D - 1 27 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2538 Ssu-Chr7 49846653 49847936 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2538 1 420 Trihelix Transcription Factor Family AT5G03680 45.598 4.34e-111 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Ssu7g2538 Myb_DNA-bind_4 4e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2538 - - aprc:113870891 688.337
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g2538 7 49846653 49847936 Ssu7g2538 7 49846653 49847936 ECH
Ssu4g0900 4 14257074 14259666 Ssu7g2538 7 49846653 49847936 PCT