Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2534 ATGAGGCATCTTTTTGGAACTTGGAAAGGGGTCTTTCCTCCTCAGACCCTTCAGGTTATTGAGCAGGAATTGGGCTTCACTCCTGCAGTTAATGGCTCATCTTCTGCTTCTGCTACACTCAGGAGTGATTCACAGTCACAACGTCCTCCTCATAGTATCCATGTGAATCCCAAGTATTTAGAAAGACAGCGTCTACAGCAGTCCAGCAGGACTAAAGGAATTGTTGATGATATGACTGGAGCAATTTCAAACTCAAATGACGACCTAGAGATGCCTGGTAGAACTTTGGGTGTTGCACGACCATGGGTGGATCCTAGTGTTACTGTTAACATCCATTCACGTGAAAATGATCAGCGTGTTCGTAGAGATGCATTCAATGATTCTGTTCTGGAAAAGAGCATTGGTGCATCCTATGGAAGCAATGAATATGGTTCCAATCTTTCGAGGAATTTGGGCTTGGGTATCAGCCGACCTGGTAGGGCGACTGAGTCAGGACATGACAAAAGTTGGTACAACAAATCTGGTGGTGTTGTTGCAGGGACCATGCCTGGGCAAAGAAATGGTTTCAGTCTCAAGTATAGTTTTTTGAATACTGAAGCACCGAAGTCCATGATTTTGGATGCACATCATCAGCCAACACAAAACATAACTAGCACATGGAGTAGTGTGATGTCAAATAGCTGGAAAAATTCTGAGGAAGAGGAGTACACATGGGATGGGATGAATTCTGGCTTGACTGGTCATGGTGCATCTACTAATAACAACTTGAGCAAAGATGGTTGGACTGCTGATGATGAGAATTTGGAAGTTGAAGATCGCCTCCAAATCAGAAATCCTTTTGGGGCAAATATTGATAGAGAAATGCCCATTGAATCTCAAGCCACTGAAAAGAAACAATTACCTGCATCCCGGCATCATTCATCACTATCATGGCAATTGCAGGAGCAGCACTCTATTGATGAGTTGAATCAGAAGGCAGGTCACTCAGACAGATTTGTGTCCACCCTTGGTTCCATACCAGCCAATACAAATTCTTCTGCTGCTAGGATGGGGAATCGGCCTTTCCTGTCAAATGCAACAATAGGATTACCTGGAATTGCAGGACAATTTCATTCTTTGGGAGCTGAAAACCCTTCAGGGCAGTCACCTTTGCGACAAAGGTCTCCGTCACCGCCAGTAAGTGTGCACCACTCTCATCCACTGCAAAATTTGGCTGAGCAAGACCTTTCCCAGACTCATAAAGCATCTCAATTTCTGGGAGGTCTGCAGAGCCAATATATTAAAGATTCTTCACCCGCCCTTCTTCCTAATATTCAGATTGGTAACTTACAAAGATCGCAACTGAAAAACTTGCAGGGTCCATTCTCTTCAATGACTTTTCAGGCAAGGCATCAGCAGCAACTGGGCTCTTCTCACAATGAGGTTACTGTTAAGACTGAGAAGCCACCCGTGTCCAAAGTTCCTTTAGCCAGAGAAACTAAAAGTAGCCTGGATACAGGGAATCTTCCATCTCAATTAGGGGTTCGGCCTGCACGTTCAGGTGGTCCTTCCCCTGCCACATTAATTTCTTCAGCATCCACAATTGCATCACCATCTTCATTAGGTCCTTCCAACAATAATTTATCTGCTCTCCCAAAAATACCTCGAAAGGCTGGACAACCTCCTAGGGCATCTTCTCTACCACCAGCTTCTTCTAATGTCAGCAGTTCCTCAGCCCAGACATCAAGTGATACCAATAATACCTTAAATCCAATTGCAAACCTTTTAAGCTCTTTAGTTGCAAAAGGCTTGATATCTGCAGAAACAGAGTCACCAACTAAGGTGCCTTCTGAGTTGCTGACTCGATTGGAAGAACAAAGCAATAGCATTACCACCAGTAGCTCTTTGCCTGTGGCCTCAGTGTCTGGTTCTGCAGCTGTCTCAGTACCTTTTACCAAAGATGAGGTAGATGACACTGCAAGAACGCCTATATCCTTATCTGAATCAACCAGCCCAGGAATCAGAAATCCCGTTGGCTTCAAGTTTAAGCCTGATGTAATACGAGAATTCCATTCATCTGTAATTAACGGATTATTTGATGATCTTCCACATCATTGCAGCATTTGTGGCCTTAGGCTTAGATTTCAAGAACAGTTCAATAGACACTTGGAGTGGCATTCCACAAGAGAAAGAGAGCAAAATGGTTTAATTAGGGCATCAAGATGGTATCTGAATTCAAGTGACTGGATTGTTGGCAAGGCTGAATATCCATCTGAGAATGAGTTTACTGATTCTGTAGATACATATGGCAAGGAAGCAGACAAAAGTCAAGAGGATGCTATGGTTCTAGCAGATGAAAACCAATGCTTGTGTGTGTTGTGTGGTCAGCTATTTGAAGATTTTTACTGTCAGGAAAATGATGAGTGGATGTTCAAAGGGGCTGTTTACCTGGCTGACTCTGACAGCAATAGTGAGATGGGAATTAGAGATGTGAGTACTGGAAGGGGTCCCATCATTCATGCAAGTTGCTTATCAAATAACTCGATTTCCAGTGTCCTCAAGATGGAACAGGATTAA 2556 0.4358 MRHLFGTWKGVFPPQTLQVIEQELGFTPAVNGSSSASATLRSDSQSQRPPHSIHVNPKYLERQRLQQSSRTKGIVDDMTGAISNSNDDLEMPGRTLGVARPWVDPSVTVNIHSRENDQRVRRDAFNDSVLEKSIGASYGSNEYGSNLSRNLGLGISRPGRATESGHDKSWYNKSGGVVAGTMPGQRNGFSLKYSFLNTEAPKSMILDAHHQPTQNITSTWSSVMSNSWKNSEEEEYTWDGMNSGLTGHGASTNNNLSKDGWTADDENLEVEDRLQIRNPFGANIDREMPIESQATEKKQLPASRHHSSLSWQLQEQHSIDELNQKAGHSDRFVSTLGSIPANTNSSAARMGNRPFLSNATIGLPGIAGQFHSLGAENPSGQSPLRQRSPSPPVSVHHSHPLQNLAEQDLSQTHKASQFLGGLQSQYIKDSSPALLPNIQIGNLQRSQLKNLQGPFSSMTFQARHQQQLGSSHNEVTVKTEKPPVSKVPLARETKSSLDTGNLPSQLGVRPARSGGPSPATLISSASTIASPSSLGPSNNNLSALPKIPRKAGQPPRASSLPPASSNVSSSSAQTSSDTNNTLNPIANLLSSLVAKGLISAETESPTKVPSELLTRLEEQSNSITTSSSLPVASVSGSAAVSVPFTKDEVDDTARTPISLSESTSPGIRNPVGFKFKPDVIREFHSSVINGLFDDLPHHCSICGLRLRFQEQFNRHLEWHSTREREQNGLIRASRWYLNSSDWIVGKAEYPSENEFTDSVDTYGKEADKSQEDAMVLADENQCLCVLCGQLFEDFYCQENDEWMFKGAVYLADSDSNSEMGIRDVSTGRGPIIHASCLSNNSISSVLKMEQD 851
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2534 851 MobiDBLite consensus disorder prediction 61 90 - -
Ssu7g2534 851 MobiDBLite consensus disorder prediction 461 582 - -
Ssu7g2534 851 MobiDBLite consensus disorder prediction 31 93 - -
Ssu7g2534 851 MobiDBLite consensus disorder prediction 370 398 - -
Ssu7g2534 851 PANTHER RNA POLYMERASE II-BINDING DOMAIN PROTEIN 1 848 - -
Ssu7g2534 851 MobiDBLite consensus disorder prediction 374 398 - -
Ssu7g2534 851 MobiDBLite consensus disorder prediction 31 52 - -
Ssu7g2534 851 MobiDBLite consensus disorder prediction 244 261 - -
Ssu7g2534 851 MobiDBLite consensus disorder prediction 294 315 - -
Ssu7g2534 851 MobiDBLite consensus disorder prediction 558 582 - -
Ssu7g2534 851 ProSitePatterns Zinc finger C2H2 type domain signature. 699 719 IPR013087 -
Ssu7g2534 851 MobiDBLite consensus disorder prediction 239 262 - -
Ssu7g2534 851 MobiDBLite consensus disorder prediction 461 478 - -
Ssu7g2534 851 MobiDBLite consensus disorder prediction 517 544 - -
Ssu7g2534 851 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 1 848 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2534 Ssu-Chr7 49799582 49803647 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2534 659 836 C2H2 Transcription Factor Family AT4G04885 38.122 2.33e-33 136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2534 K14400 - gmx:100807857 1107.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0905 4 14349395 14355088 Ssu7g2534 7 49799582 49803647 PCT