LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu7g2531	ATGAGCCCGAGCGATGACAACAACTCTCCCAAACCGCTGGAGATTTCCCCGGTTCCGCCGTTTCTGTCCAAGACTTTCGACCTCGTCGATGACCCGACTCTGGACCCGATCATCTCGTGGGGCTCCACCGGTTTTAGTTTCGTGGTGTGGGATCCTCTCGAGTTCGCGAGACTCGTCTTGCCGCGCCATTTCAAGCACAGCAACTTCTCCAGCTTCGTTCGCCAGCTCAACACTTATGGATTCCGCAAGATTGATACTGACAAGTGGGAGTTTTACAATGAAGCTTTCCAGCGAGGGAAGAAGCATTTGCTGAAGAACATCCAAAGGCGCAGGTCACCTCAATCCCAGCAGGTTGGTAGCTATATTGGAATTGGATCTCCTACAGATGCAGTGAAGTCTGGAGTTGAGGTTGAGATTGAAAGGCTGAGGAAAGAAAGGAGTATGTTAATGGAAGAGGTGGTTGatttacaacaacaacaacgaagAACAGCTCACCGCACAGGAGAAGTGAATCAAAGGCTCCAATCTGCAGAACAAAGGCAGAAACAAATGGTTTCTTTCTTGGCCAAGTTGTTCCAAAACCCGGCCTTTTTGGCCCACCTTAGGCAAAAGAAGGAGCAAAGAGAAATAGATTCTCCAAGAGTGGTAAGGAAGTTTGTCAAGCAGCACCAACATGAAGCAGGAACAGCAGAAACTCTCAAAGAAGGGCAGATAATGAGGTACCAACCTGATTGGAGAAATACAGGCATGTCTTCTGAAACTCCAGAACTAAGTCCAGTTTCCATTGAACAGTCTCCTCACTACCTTTCACAGGGTTTGGACAGGAGAAATGAGTCTAGGTACAGAAGATCTAACTGCTCAAATTGA	867	0.4671	MSPSDDNNSPKPLEISPVPPFLSKTFDLVDDPTLDPIISWGSTGFSFVVWDPLEFARLVLPRHFKHSNFSSFVRQLNTYGFRKIDTDKWEFYNEAFQRGKKHLLKNIQRRRSPQSQQVGSYIGIGSPTDAVKSGVEVEIERLRKERSMLMEEVVDLQQQQRRTAHRTGEVNQRLQSAEQRQKQMVSFLAKLFQNPAFLAHLRQKKEQREIDSPRVVRKFVKQHQHEAGTAETLKEGQIMRYQPDWRNTGMSSETPELSPVSIEQSPHYLSQGLDRRNESRYRRSNCSN	288

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu7g2531	288	Pfam	HSF-type DNA-binding	21	110	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Ssu7g2531	288	ProSitePatterns	HSF-type DNA-binding domain signature.	60	84	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Ssu7g2531	288	PRINTS	Heat shock factor (HSF) domain signature	21	44	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Ssu7g2531	288	PRINTS	Heat shock factor (HSF) domain signature	72	84	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Ssu7g2531	288	PRINTS	Heat shock factor (HSF) domain signature	59	71	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Ssu7g2531	288	MobiDBLite	consensus disorder prediction	245	272	-	-
	Ssu7g2531	288	MobiDBLite	consensus disorder prediction	245	288	-	-
	Ssu7g2531	288	Coils	Coil	132	159	-	-
	Ssu7g2531	288	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	11	249	IPR027725	-
	Ssu7g2531	288	Gene3D	-	14	111	IPR036388	-
	Ssu7g2531	288	SUPERFAMILY	"Winged helix" DNA-binding domain	17	110	IPR036390	-
	Ssu7g2531	288	SMART	hsfneu3	17	110	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Ssu7g2531	288	PANTHER	HEAT STRESS TRANSCRIPTION FACTOR A-3	11	249	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu7g2531	Ssu-Chr7	49757789	49759879	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu7g2531	10	256	HSF	AT5G03720	60.311	2.42e-97	290

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Ssu7g2531		HSF_DNA-bind	7.3e-32	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu7g2531	K09419		-	gmx:100780835	470.7