Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2530 ATGGAAATGCCTGCCAGAAGATCCAACTACTCGCTCCTCAGCCAAATTCCCGACGACCAGTTCTCCGGCGGGCCCGCGGCGCCGTCCTCCTCCGGCGACGGCAAGACCGGCCGCGGCGGCGGCAAGTCGGACCGTGCCTTCGACTGGGACCTGGTCGCCGATCACCGGGCGGCGCAGCAGGGGACCGGCAACCGAATCGGCAGCCTGTACTCCTCGATCGGCCTGCAGCGGCAGTCCAGCGGGAGTAGCTACGGCGAGAGCTCGCTCTCCGGCGGCGGCGACTTCTACGCCCCAACGCTGTCCACGGCGGCGGCGAGCGAGGCCGACGCCTTCGCGTACCTCCACGACGAGCGGAGCAAGTTCCCGGAGGCTCCGGCGCGGGTCGCCGGGTCCTCCGGGAAGAGCTGGGCGCAGCAGACGGAGGAGAGCTACCAGCTGCAGCTTGCGCTCGCGCTGCGGCTCTCCTCCGACGCCACGTGCGCCGATGACCCCAATTTCCTGGATCCGCTGCCGGACGATTCGGCTCTCAGGCTGTCGTCGTCGGCGGAGGCGGTTTCGCATAGGTTTTGGGTGAATGGCTGCCTATCATACTCCAACAAAATTCCAGATGGCTTTTACCTAATTCACGGGATGGATTCCTATGTCTGGACCGTGTGCACTGAACTGCACGAAAATAGCCGAATTCCATCTGTTGATACACTGAAGTCTGTGAATCCCTGCATCGTATCTTCACTCGAAGTAGTTCTGGTGGATCGACGCAGTGACCCCAGCTTAAGAGATCTGCAAAATAGAGTTCATAGCATTTCGTGTACCAGCATAACAACAACAGATGTTGTAGATCAGCTTTCGAAGCTGGTTTGCAACCGTATGGGGGGTTCAGCTTCTGTTGGGGAAGATAACTTTGTTTCCATCTGGAGGGATTGCAGTAATGATCTGAAAGATTGCTTAGGATCTGTTGTTATTCCTATAGGTAGTCTATCTGTTGGCCTCTGCAGGCATCGTGCTATATTATTCAAAGTACTGGCTGATGCCATCGATTTACCGTGTCGAATTGCAAAGGGCTGTAAATATTGCAAAAGGGATGATGCTACATCTTGTCTTGTTCGATTTGGGCTTGAGAGGGAATATCTTGTTGATTTAATTGGAAAGCCAGGAAACTTATCTGAGCCTGATTCCTTGCTCAATGGTCCATCTTCCATCTCATTTTCTTCACCCTTGCGCTTTCCACGACTTAAACCAGCTGAACCTACCATTGATTTCAGGTCACTGGCCAAACAATATTTCTCGGACTGTCTGTCTCTTCAGCTTGTCTTCGACAACAGTTCTGCAGAACAGTTTGATGGGAAGAGCAAAGACAGGAATAACCCTAGGCCAATTTCAACTGACAGCAATAGAAGTTCTCACCTTCCTTTGCATCCCCAAGATTCTCATCCAAGCACTCGTGAAGGTTCTGAAACATATCTATCATGTAACCCTCCTCAGAACATTGTAGACTCAACAACTGCGGGAAAGTATCCACCGCCAATAAAGCATAAGCGTCCTGTTGGTATACCAACCCCGTTAGCACTTGCAAATACTAATGATGACATGATTGAGGGCAAGAGGTTTGTTGAAGGAAGTCAACTGATTCCTAGCAAACCTACTCGAGAGCTTACCCTTGACATGGAGGATTTGGACATACCATGGAGTGATCTTgttttaagagagaaaatagggtCAGGTTCTTTTGGAACTGTACATCGTGCTGAGTGGAATGGCTCGGATGTTGCTGTGAAAATTTTGATGGAACAGGATTTTCATGCTGAGCGCTTCAAGGAATTCCTGAGGGAGGTTGCAATAATGAAACGCTTGCGGCATCCAAACATTGTTTTGTTTATGGGGGCAGTCACTCAGCCTCCTAACTTGTCAATTGTCACAGAATATTTATCAAGGGGTAGCTTATATAGGCTGTTGCATAGATCTGGTGCCAAAGAGGTGTTGGATGAGAGGCGTAGGCTTGGTATGGCTTATGACGTGGCAAAGGGGATGAACTATCTTCATAAACGTAATCCCCCCATTGTTCATAGAGATCTGAAGTCTCCAAACCTTCTTGTTGACAAGAAATATACAGTGAAGGtttgtgattttgggctttcaCGTCTGAAGGCCAATACGTTTCTCTCATCCAAGTCAGCTGCTGGGACTCCTGAGTGGATGGCTCCAGAGGTTCTTCGTGATGAGCCATCAAATGAGAAGTCCGATGTTTACAGCTTTGGTGTAATCTTATGGGAGATTGCAACATTGCAACAGCCATGGGTTAATTTAAATCCAGCACAGGTTGTGGCAGCTGTTGGCTTTAAGGGAAAAAGGCTTGAGATCCCACATGATTTGAATCCCCAAGTAGCTGCACTAATTGAGGCTTGCTGGGCTAATGAGCCTTGGAAACGACCTTCTTTTGCGAATATTATGGATTCTTTGAGGCTATTGCTCAAACCCCCTACACCTCAACCTGGTCATCCGAGCATGCCATTACTCACCTGA 2520 0.4937 MEMPARRSNYSLLSQIPDDQFSGGPAAPSSSGDGKTGRGGGKSDRAFDWDLVADHRAAQQGTGNRIGSLYSSIGLQRQSSGSSYGESSLSGGGDFYAPTLSTAAASEADAFAYLHDERSKFPEAPARVAGSSGKSWAQQTEESYQLQLALALRLSSDATCADDPNFLDPLPDDSALRLSSSAEAVSHRFWVNGCLSYSNKIPDGFYLIHGMDSYVWTVCTELHENSRIPSVDTLKSVNPCIVSSLEVVLVDRRSDPSLRDLQNRVHSISCTSITTTDVVDQLSKLVCNRMGGSASVGEDNFVSIWRDCSNDLKDCLGSVVIPIGSLSVGLCRHRAILFKVLADAIDLPCRIAKGCKYCKRDDATSCLVRFGLEREYLVDLIGKPGNLSEPDSLLNGPSSISFSSPLRFPRLKPAEPTIDFRSLAKQYFSDCLSLQLVFDNSSAEQFDGKSKDRNNPRPISTDSNRSSHLPLHPQDSHPSTREGSETYLSCNPPQNIVDSTTAGKYPPPIKHKRPVGIPTPLALANTNDDMIEGKRFVEGSQLIPSKPTRELTLDMEDLDIPWSDLVLREKIGSGSFGTVHRAEWNGSDVAVKILMEQDFHAERFKEFLREVAIMKRLRHPNIVLFMGAVTQPPNLSIVTEYLSRGSLYRLLHRSGAKEVLDERRRLGMAYDVAKGMNYLHKRNPPIVHRDLKSPNLLVDKKYTVKVCDFGLSRLKANTFLSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWEIATLQQPWVNLNPAQVVAAVGFKGKRLEIPHDLNPQVAALIEACWANEPWKRPSFANIMDSLRLLLKPPTPQPGHPSMPLLT 839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2530 839 Gene3D Phosphorylase Kinase; domain 1 558 643 - -
Ssu7g2530 839 ProSitePatterns Serine/Threonine protein kinases active-site signature. 686 698 IPR008271 GO:0004672|GO:0006468
Ssu7g2530 839 ProSitePatterns Protein kinases ATP-binding region signature. 571 592 IPR017441 GO:0005524
Ssu7g2530 839 MobiDBLite consensus disorder prediction 8 29 - -
Ssu7g2530 839 ProSiteProfiles Protein kinase domain profile. 565 835 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu7g2530 839 CDD STKc_MAP3K-like 571 819 - -
Ssu7g2530 839 PANTHER MAP KINASE KINASE KINASE-LIKE PROTEIN 124 829 - -
Ssu7g2530 839 MobiDBLite consensus disorder prediction 1 45 - -
Ssu7g2530 839 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 124 829 - -
Ssu7g2530 839 Pfam Ethylene-responsive protein kinase Le-CTR1 182 387 - -
Ssu7g2530 839 PRINTS Tyrosine kinase catalytic domain signature 746 768 IPR001245 GO:0004672|GO:0006468
Ssu7g2530 839 PRINTS Tyrosine kinase catalytic domain signature 790 812 IPR001245 GO:0004672|GO:0006468
Ssu7g2530 839 PRINTS Tyrosine kinase catalytic domain signature 639 652 IPR001245 GO:0004672|GO:0006468
Ssu7g2530 839 PRINTS Tyrosine kinase catalytic domain signature 680 698 IPR001245 GO:0004672|GO:0006468
Ssu7g2530 839 PRINTS Tyrosine kinase catalytic domain signature 727 737 IPR001245 GO:0004672|GO:0006468
Ssu7g2530 839 SMART serkin_6 565 822 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu7g2530 839 SUPERFAMILY Protein kinase-like (PK-like) 543 819 IPR011009 -
Ssu7g2530 839 Pfam Protein tyrosine and serine/threonine kinase 566 819 IPR001245 GO:0004672|GO:0006468
Ssu7g2530 839 MobiDBLite consensus disorder prediction 459 474 - -
Ssu7g2530 839 MobiDBLite consensus disorder prediction 480 501 - -
Ssu7g2530 839 Gene3D Transferase(Phosphotransferase) domain 1 644 827 - -
Ssu7g2530 839 MobiDBLite consensus disorder prediction 443 518 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2530 Ssu-Chr7 49740926 49755441 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2530 1 830 MAP Kinase Kinase Kinase AT5G03730 64.550 0.0 987
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Ssu7g2530 PK_Tyr_Ser-Thr 1.3e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2530 K14510 - gmx:100800648 1496.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g2530 7 49740926 49755441 Ssu7g2530 7 49740926 49755441 ECH
Ssu4g0908 4 14399206 14413266 Ssu7g2530 7 49740926 49755441 PCT