Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2525 ATGGAAGCAACACTCAGCAACACCGTTCCCGCAGGGTCACCCGCACCACCTTCAGTGACACCCTCAGTGCCTCAGCCAATGAACATGAACGTTGGAAACACCGAAGGAACcgcaacaacaacagcaatggTTCCTCCTGTGCcagccacaacaacaacattaataACGACACCAGGGACAGGGAGCACTGGGGGACAAGGGAGCTTTGACTTGTTTGGGAAAAAGAAGAGAGGGAGGCCGAGGAAGTATGACGCAGATGGGAACCTGAGGGTGAGTGCAACCCCGACACCACCGCCACCGGGTTTCACTTTGTCCACACCTTCCGAGTTCTCTTCTTCCAAAAGGGGGCGTGGCAAACACAGCACCTCGTTTGGCAACTACCaactcttctcttcttttgGTGAGGTGTTTGCGAGCACAGCTGCTGGGGATTTTATACCGCATGTGGTGACTGTTTATACTGGAGAGGATGTTGCTGGAAAGATCATGTCATTTGTCCAGAAGGGTCCAAGAGGAATATGCATTCTCTCTGCCAATGGAGCTATCTCTAATGTCACCATACGCCAACCTGGTTCTTCTGGTGGCATATTGACTTACGAGGGTCGATTTGAGATTTTATCTTTGTCTGGATCATTCACGGTTGCCGACAACAGTGGCATGAAAAGTCGAACTGGTGGATTGAGTGTCTCACTTGCTGGCCCTGATGGTCGAGTGATAGGAGGTGGTGTAGCTGGACTTTTAACAGCTGCTGGCCCCATCCAAATTGTGGTAGGAAGCTTCACGCAAAATGGTTACAAGGCCCAAAAGAGGAAGTATCAACGTGAACAACAGACAGTGATCTCCCCTACTTCAGCTGGTCCAGAAACAGTGACAGCAGCAAGACCTATCTCACAAGCACATGCTGATGGTGAAAACTTTCTGATGCCCATGTCTCAGTTACCAGATCAAAACCAGAGAGAATCTGTCAGTGTTGCAAGTGATAAGCAGAACCTAGATGCTACACCTGATGCTGCTACTTGGAATGGTTCTGTGGAATTTTCAGACCAGAGGACATCCCCAGACATCAACATATCTTTGCCAGACGAATAG 1089 0.4711 MEATLSNTVPAGSPAPPSVTPSVPQPMNMNVGNTEGTATTTAMVPPVPATTTTLITTPGTGSTGGQGSFDLFGKKKRGRPRKYDADGNLRVSATPTPPPPGFTLSTPSEFSSSKRGRGKHSTSFGNYQLFSSFGEVFASTAAGDFIPHVVTVYTGEDVAGKIMSFVQKGPRGICILSANGAISNVTIRQPGSSGGILTYEGRFEILSLSGSFTVADNSGMKSRTGGLSVSLAGPDGRVIGGGVAGLLTAAGPIQIVVGSFTQNGYKAQKRKYQREQQTVISPTSAGPETVTAARPISQAHADGENFLMPMSQLPDQNQRESVSVASDKQNLDATPDAATWNGSVEFSDQRTSPDINISLPDE 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2525 362 MobiDBLite consensus disorder prediction 310 356 - -
Ssu7g2525 362 PANTHER AT HOOK MOTIF DNA-BINDING FAMILY PROTEIN 9 361 - -
Ssu7g2525 362 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 9 361 IPR039605 GO:0003680
Ssu7g2525 362 CDD DUF296 147 260 IPR005175 -
Ssu7g2525 362 ProSiteProfiles PPC domain profile profile. 142 286 IPR005175 -
Ssu7g2525 362 MobiDBLite consensus disorder prediction 53 67 - -
Ssu7g2525 362 MobiDBLite consensus disorder prediction 308 362 - -
Ssu7g2525 362 MobiDBLite consensus disorder prediction 72 86 - -
Ssu7g2525 362 Gene3D - 147 281 - -
Ssu7g2525 362 MobiDBLite consensus disorder prediction 53 118 - -
Ssu7g2525 362 Pfam Plants and Prokaryotes Conserved (PCC) domain 147 261 IPR005175 -
Ssu7g2525 362 SUPERFAMILY AF0104/ALDC/Ptd012-like 144 268 - -
Ssu7g2525 362 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2525 Ssu-Chr7 49546014 49549796 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2525 74 330 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 50.923 1.29e-71 225
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2525 - - gmx:100779227 545.428
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g2525 7 49546014 49549796 Ssu7g2525 7 49546014 49549796 ECH