Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2519 ATGGAACCCAATGGACTAGGTAGTGGAATGTTCTCTGGGTTGGTAGGAGTGGAAAACCCTTTACAACAGCAACAGCAAAACCCTCACCATTTGCAACATCATCCCCAAATGGTTCCCTATGCCACACACCATGACACTGACCCACATCCACACCTTCAGCAACCAATCAAACATGGGTACCCTCTCTTTTCATCCAagaacaaacaacaacaacaacaacaacaaagccccCCCACTGATGAAGATGAGCCAGGGTTTCCTGCTGACGAGGACCCCAAGAGGAAGGTCTCACCATGGCAGAGAATGAAGTGGACTGACACCATGGTTAGGCTCTTGATTATGGCGGTTTATTACATTGGTGATGAGGCTGGTTCTGAAGGGACTGATCCCACTGGGAAGAAGAAGTCCTCAGGTTTGATGCAGAAGAAAGGGAAGTGGAAATCAGTGTCAAGGGCTATGATGGAAAAGGGGTTCTATGTTTCTCCTCAGCAGTGTGAGGATAAGTTCAATGACTTGAACAAGAGGTATAAGAGGGTGAATGATATTCTTGGCAAGGGAACGGCTTGCAGGGTTGTGGAGAATCAGAACTTGTTGGACACAATGGACTTGTCACCAAAGATGAAAGAGGAGGTTAAGAAGTTGCTCAATTCCAAGCATTTGTTCTTCAGGGAAATGTGTGCCTACCATAATAGTTGTGGCCACGGGAATAACAATGTTCCACAGCAAGCGGAATCTGGGGGGGAAGTGTCTCAGTCTCAGGCTCAACCACATCAtcagcaacaacagcaacaacaacgtTGTTTTCATTCATCAGAGGTGGGGAATTTGGGGGGTTCAGGAGTAGAGGGTTTGAGAATGTTGAAAGTGGGAAGTGGGGAAGAGGAGgatgatgatgacgatgacGACGATGACTCCGAGGATGATTCAGATGAGGATGAAGATGAATCAGGAGAAGGTGGTTCAAGGGGTCAGGTGGGGCATGGACATGAAGATGAGGATGAGAATGATGGAAGGTCAATGAGGAAGAGGGCAAGGAAAGTAGGGGGGGTTTCTATGTCACCACAGTTGATGCAGCAACTGAGTGCTGAGGTGAGTAGTGTGTTCCAAGATGGGGGTAGGAGTGCTTGGGACAAAAAGCAATGGATGAGGAGCAGGATAATGCAGTTGGAGGAGCAGCAATTGAGCTATCAAACTCAAGCATTTGAGTTGGAGAAACAAAGGTTGAAATGGGCAAGGTTTAGCAGCAAGAAGGAGAGGGAAATGGAGAGAGCCAAACTAGAAAATGAACGCAGGAGGcttgagaatgagagaatgattTTGCTCATTCGCCAGAAGGAGCTTGAGTTGATGAGTCTTCAACACcaacagcagcagcagcagcaacaacaacaacaacattcttCCACCTAG 1410 0.4298 MEPNGLGSGMFSGLVGVENPLQQQQQNPHHLQHHPQMVPYATHHDTDPHPHLQQPIKHGYPLFSSKNKQQQQQQQSPPTDEDEPGFPADEDPKRKVSPWQRMKWTDTMVRLLIMAVYYIGDEAGSEGTDPTGKKKSSGLMQKKGKWKSVSRAMMEKGFYVSPQQCEDKFNDLNKRYKRVNDILGKGTACRVVENQNLLDTMDLSPKMKEEVKKLLNSKHLFFREMCAYHNSCGHGNNNVPQQAESGGEVSQSQAQPHHQQQQQQQRCFHSSEVGNLGGSGVEGLRMLKVGSGEEEDDDDDDDDDSEDDSDEDEDESGEGGSRGQVGHGHEDEDENDGRSMRKRARKVGGVSMSPQLMQQLSAEVSSVFQDGGRSAWDKKQWMRSRIMQLEEQQLSYQTQAFELEKQRLKWARFSSKKEREMERAKLENERRRLENERMILLIRQKELELMSLQHQQQQQQQQQQQHSST 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2519 469 PANTHER F16F4.11 PROTEIN-RELATED 1 468 - -
Ssu7g2519 469 MobiDBLite consensus disorder prediction 123 143 - -
Ssu7g2519 469 Gene3D - 104 178 - -
Ssu7g2519 469 Coils Coil 386 406 - -
Ssu7g2519 469 PANTHER MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN 1 468 - -
Ssu7g2519 469 MobiDBLite consensus disorder prediction 237 272 - -
Ssu7g2519 469 MobiDBLite consensus disorder prediction 39 99 - -
Ssu7g2519 469 MobiDBLite consensus disorder prediction 318 343 - -
Ssu7g2519 469 Coils Coil 414 462 - -
Ssu7g2519 469 Pfam Myb/SANT-like DNA-binding domain 101 227 IPR044822 -
Ssu7g2519 469 MobiDBLite consensus disorder prediction 63 80 - -
Ssu7g2519 469 MobiDBLite consensus disorder prediction 237 352 - -
Ssu7g2519 469 MobiDBLite consensus disorder prediction 293 317 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2519 Ssu-Chr7 49360865 49362274 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Ssu7g2519 Myb_DNA-bind_4 1.9e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2519 - - gmx:100816661 706.827
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g2519 7 49360865 49362274 Ssu7g2519 7 49360865 49362274 ECH
Ssu4g0922 4 14680348 14681724 Ssu7g2519 7 49360865 49362274 PCT