Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2516 ATGGAGTGGAATGGGAGCACAAGACGTTATGTTCCCCGAGCAGAGTCTTCCTTAAGCTTCCTTTACAACTACAACTACACCCCATATCCagGAATGGAAGTGAAGCAACAAACGCTGGCAGAGACAAGTCCATCCATGGAAAAAATGAACTGCGGGAACCAGGAGAAGAAGAAGCGATTAACTAGTGACCAGTTAGACTCGTTGGAGAATAGTTTTCAGAAGGAGATAAAGCTAGACCCTGATAGGAAGATGAAGCTTTCCAAGGAGTTAGGGCTTCAAGCTCGCCAAATTGCTGTTTGGTTCCAAAATAGGCGTGCAAGGTGGAAGGCCAAGCAACTTGAACACTTGTATGATTCACTTAAACAGGAATTTGATGTCATATCCAAGGAAAAACAGAAGCTCGAGGAAGAGGTAATGAAGTTGAAGGCTATGCTGAGAGAGCAAGCTTCTAGAACCCAAGTGTCAACAGGTTACACAGAAATCTCTGGGGAAGAAACAGTAGAAAGCACGTCAGAGGCTCTGCGTTGCTCCAAACGGGGAACACTGCACCAGCAGCAGAATATTGGCGAGGGAAACTGTTCATCTTTCACTTTGGAGGAGTATAACACAGTTCCAGTACTACCCTACTGGCCTGGGGTCCCTTATTATCCCTAA 654 0.4557 MEWNGSTRRYVPRAESSLSFLYNYNYTPYPGMEVKQQTLAETSPSMEKMNCGNQEKKKRLTSDQLDSLENSFQKEIKLDPDRKMKLSKELGLQARQIAVWFQNRRARWKAKQLEHLYDSLKQEFDVISKEKQKLEEEVMKLKAMLREQASRTQVSTGYTEISGEETVESTSEALRCSKRGTLHQQQNIGEGNCSSFTLEEYNTVPVLPYWPGVPYYP 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2516 217 Coils Coil 103 151 - -
Ssu7g2516 217 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 208 IPR045224 GO:0003700
Ssu7g2516 217 SMART HOX_1 54 115 IPR001356 GO:0003677
Ssu7g2516 217 Pfam Homeobox associated leucine zipper 111 145 IPR003106 GO:0006355|GO:0043565
Ssu7g2516 217 PRINTS Lambda-repressor HTH signature 82 91 IPR000047 GO:0003677
Ssu7g2516 217 PRINTS Lambda-repressor HTH signature 91 107 IPR000047 GO:0003677
Ssu7g2516 217 CDD homeodomain 56 112 IPR001356 GO:0003677
Ssu7g2516 217 ProSitePatterns 'Homeobox' domain signature. 86 109 IPR017970 GO:0000981|GO:0006355
Ssu7g2516 217 SUPERFAMILY Homeodomain-like 55 121 IPR009057 -
Ssu7g2516 217 Gene3D - 53 117 - -
Ssu7g2516 217 Pfam Homeodomain 56 109 IPR001356 GO:0003677
Ssu7g2516 217 ProSiteProfiles 'Homeobox' domain profile. 51 111 IPR001356 GO:0003677
Ssu7g2516 217 MobiDBLite consensus disorder prediction 42 61 - -
Ssu7g2516 217 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 1 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2516 Ssu-Chr7 49267103 49268716 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2516 16 141 Homeobox Transcription Factor Family AT5G03790 57.971 1.71e-43 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Ssu7g2516 Homeodomain 8.6e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2516 - - gmx:100778007 406.371
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g2516 7 49267103 49268716 Ssu7g2516 7 49267103 49268716 ECH
Ssu4g0925 4 14727616 14729633 Ssu7g2516 7 49267103 49268716 PCT