Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2515 ATGGTTCTCAAGACCGAACTTTGCCGTTTTAGTGGCGCAAAGATCTACCCTGGAAAAGGCATCAGATTTGTTCGTGGGGATTCTCAGGTTTTCCTTTTTGCCAACTCAAAATGCAAAAGGTATTTCCACAACCGATTGAAGCCATCAAAGCTCACCTGGACTGCCATGTATAGGAAGCAGCATAAAAAGGATATTGCCCAAGAGTCTGTGAAGAAGAGGCGTAGGACTACCAAAAAGCCTTACTCTAGGTCCATTGTTGGTGCTACACTGGAAGTTATTCAGAAAAAAAGAACTGAGAAGCCAGAGGTTCGAGATGCTGCTAGAGAAGCTGCTCTCCgTGAAATTAAAGAGAGGGTAAAGAAAACAAAGGACGAGAAGAAGGCGAAGAAGGCAGAAGTTCAGGCTAAGTTACAAAAATCACAAGGTAAAGGCAATGTTACCAAGGCTGCTGCACCCAAAGGTCCCAAGCTTGGTGGCGGAGGTGGCAAGCGCTGA 495 0.4545 MVLKTELCRFSGAKIYPGKGIRFVRGDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAQESVKKRRRTTKKPYSRSIVGATLEVIQKKRTEKPEVRDAAREAALREIKERVKKTKDEKKAKKAEVQAKLQKSQGKGNVTKAAAPKGPKLGGGGGKR 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2515 164 ProSitePatterns Ribosomal protein L24e signature. 10 27 IPR023442 -
Ssu7g2515 164 PANTHER 60S RIBOSOMAL PROTEIN L24 1 164 - -
Ssu7g2515 164 Gene3D - 70 150 - -
Ssu7g2515 164 Coils Coil 112 143 - -
Ssu7g2515 164 Pfam Ribosomal protein L24e 4 67 IPR000988 -
Ssu7g2515 164 MobiDBLite consensus disorder prediction 118 136 - -
Ssu7g2515 164 Gene3D Ribosomal protein L24e 3 64 IPR038630 -
Ssu7g2515 164 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 6 58 - -
Ssu7g2515 164 MobiDBLite consensus disorder prediction 62 83 - -
Ssu7g2515 164 CDD Ribosomal_L24e_L24 3 56 IPR000988 -
Ssu7g2515 164 PANTHER 60S RIBOSOMAL PROTEIN L24 1 164 IPR000988 -
Ssu7g2515 164 SMART 4TRASH 8 46 IPR011017 -
Ssu7g2515 164 MobiDBLite consensus disorder prediction 118 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2515 Ssu-Chr7 49260575 49262862 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2515 1 157 Cytoplasmic Ribosomal Protein Gene Family AT2G36620 84.076 3.54e-87 250
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2515 K02896 - gmx:100499884 251.136
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g2515 7 49260575 49262862 Ssu7g2515 7 49260575 49262862 ECH
Ssu4g0926 4 14738453 14740469 Ssu7g2515 7 49260575 49262862 PCT