Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2514 ATGGGGGACAAGCACCCCCAAGACGACAGCAGCGATTTCACCTCCGAGGACGAAGGCACCGAGGATTACCGCCGCGGCGGCTACCACGCCGTCCGAATCGGCGACACTTTTAACGCCGGTCGCTACGTCGTCCAGAGCAAGCTCGGTTGGGGTCATTTCTCCACTGTCTGGCTCGCTTGGGACATCAAACATTCTAGATACGTGGCTTTGAAAGTGCAGAAGAGTGCTCAGCACTACACCGAGGCTGCCATGGATGAGATAACGATTTTGCAACAGATTGCAGAGGGAGACCCGGATGATAAGAAATGTGTGGTGAAGCTTTTGGACCATTTCAAGCATTCTGGTCCCAATGGGCAGCATGTTTGCATGGTGTTTGAGTACCTTGGGGACAATCTTTTGACTCTTATTAAGTACTCCGATTATCACGGGTTGCCTATTAGTATGGTTAAGGAGATATGTTTTCATATTCTGGTTGGATTGGATTACTTGCACAAGCAGCTTTCTATCATACATACTGACTTGAAGCCTGAAAACATATTGCTCTTGTCGATGATTGATCCGTCTAAGGATCCTAGGAAGTCCGGGGCACCGCTTATTCTTCCTAATAGTAAAGATAAGACGGCGCTGGAGTTGGCAGGTGCGAAAGATGCGAAGACGTTGAATGGGGATTTGATTACGaatcataagaaaaagataaagagaaaagctAAGCAAGCAGCCCATGGATGTGTGGAGAAGGAAGCCTCTGAAGGAGTTGAGGGTAATCCCGAAACTTCTGGGGCTGTGGAGTCGTCTCCAAATGCAAGAGAAGAGGCTTCTAGTTCTGCAGGAACTAGTAGGTTATCGGATGCTGATGGAACGAAGATGAAAGAGCAGGGTAACAAAAGAGGAAGCCGCTCTATGAGACAGAAGCTGCTGGCATCGGTTGATCTCAAGTGCAAGTTAGTGGACTTCGGTAATGCCTGCTGGACATATAAACAGTTTACTAATGATATCCAGACAAGACAGTATCGGTGCCCTGAGGTGATCCTTGGGTCGAAATATTCTACGTCTGCTGATCTTTGGTCCTTTGCTTGCATTTGTTTTGAGCTTGCAACTGGAGATGTGTTGTTTGATCCTCACAGTGGTGACAACTTTGATAGGGATGAGGACCACTTAGCATTAATGATGGAACTACTTGGAATGATGCCACGTAAGATAGCACTAGGTGGCCGTTATTCCCGTGATTTCTTTAATAGATATGGTGACTTAAGGCACATCCGGCGGTTGCGATTCTGgcccttgaataaagtcctcaTGGAGAAGTATGACTTCAGTGAGAAAGATGCAAATGATATGACAGACTTTTTGGTTCCTATCCTTGACTTTGTTCCTGAGAAGCGGCCAACAGCTGGTCAGTGCCTTCTTCATACATGGATCAATGTAGTTCCACGCCTTTTGGAGCCACCTGTGCCTTCTAATCACAACCCTGGTGCTGAAACTGCTGTCTCTGACGAGAAGAAAAAGGACAAAGATGAGAGGGAGGCCATGGAGGCAGGAATGGGAAATATTGTTATCAATTCAGATTCTAAACCACTGATGTATTCTCCGTCCAAGAAAGCCTTCCAAGGCAGCCAGAAGTAG 1623 0.4578 MGDKHPQDDSSDFTSEDEGTEDYRRGGYHAVRIGDTFNAGRYVVQSKLGWGHFSTVWLAWDIKHSRYVALKVQKSAQHYTEAAMDEITILQQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGDNLLTLIKYSDYHGLPISMVKEICFHILVGLDYLHKQLSIIHTDLKPENILLLSMIDPSKDPRKSGAPLILPNSKDKTALELAGAKDAKTLNGDLITNHKKKIKRKAKQAAHGCVEKEASEGVEGNPETSGAVESSPNAREEASSSAGTSRLSDADGTKMKEQGNKRGSRSMRQKLLASVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVILGSKYSTSADLWSFACICFELATGDVLFDPHSGDNFDRDEDHLALMMELLGMMPRKIALGGRYSRDFFNRYGDLRHIRRLRFWPLNKVLMEKYDFSEKDANDMTDFLVPILDFVPEKRPTAGQCLLHTWINVVPRLLEPPVPSNHNPGAETAVSDEKKKDKDEREAMEAGMGNIVINSDSKPLMYSPSKKAFQGSQK 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2514 540 SMART serkin_6 42 473 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu7g2514 540 MobiDBLite consensus disorder prediction 483 540 - -
Ssu7g2514 540 Gene3D Phosphorylase Kinase; domain 1 18 124 - -
Ssu7g2514 540 MobiDBLite consensus disorder prediction 1 22 - -
Ssu7g2514 540 MobiDBLite consensus disorder prediction 236 301 - -
Ssu7g2514 540 Pfam Protein kinase domain 306 473 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu7g2514 540 Pfam Protein kinase domain 42 181 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu7g2514 540 MobiDBLite consensus disorder prediction 238 252 - -
Ssu7g2514 540 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 9 535 - -
Ssu7g2514 540 ProSiteProfiles Protein kinase domain profile. 42 473 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu7g2514 540 MobiDBLite consensus disorder prediction 258 282 - -
Ssu7g2514 540 Gene3D Transferase(Phosphotransferase) domain 1 125 474 - -
Ssu7g2514 540 PANTHER SERINE KINASE-LIKE PROTEIN 9 535 - -
Ssu7g2514 540 MobiDBLite consensus disorder prediction 494 511 - -
Ssu7g2514 540 ProSitePatterns Protein kinases ATP-binding region signature. 48 71 IPR017441 GO:0005524
Ssu7g2514 540 ProSitePatterns Serine/Threonine protein kinases active-site signature. 169 181 IPR008271 GO:0004672|GO:0006468
Ssu7g2514 540 MobiDBLite consensus disorder prediction 284 298 - -
Ssu7g2514 540 CDD STKc_SRPK 31 473 - -
Ssu7g2514 540 SUPERFAMILY Protein kinase-like (PK-like) 37 488 IPR011009 -
Ssu7g2514 540 MobiDBLite consensus disorder prediction 522 540 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2514 Ssu-Chr7 49218875 49230210 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2514 9 524 EF-hand Containing Proteins AT5G22840 70.250 0.0 742
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_SRPK Ssu7g2514 Pkinase 4.4e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2514 K08832 - gmx:100803070 1016.53