Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2499 ATGGACACAATGTTGGTGCCTCCATGGCTTGAACCACTCCTAAACACACCCTTTTTCAATGTCTGTCGGATTCACGGGGATGCTGCGAGGAGCGAATGTAACATGTTTTGTCTGGATTGCAACGGGGATGCGTTTTGCTTTTATTGCCGTTCCTCAAGACACAAGGATCACCAAGTCATTCAGATAAGGAGATCTTCGTATCACGATGTAGTGAGGGTGGCGGAAATTCAGAAGGTGTTGAACATTAGTGGAGTACAGACATATGTGATCAACAGTGCCAGAGTTCTGTTTCTGAATGAGAGGCCTCAGCCAAAATCTGGGAAAGGAGTAGTAGCTCACATTTGTGAGATTTGCGGAAGAAGCCTCTTGGACCCATTTCGCTTCTGTTCTTTGGGGTGTAAGCTCGTGGGAATAAAGAGAAATGGGGATGCAAGCTTTGCTTTGGATGCTAAAAATGAGGCATCGGCGATGGAGGGAATGTCAAGGAGATCAGTTTCTTCAAGACATCATCAAGAAGAAGAATTGCGTGAAGGCTCACAACAAGACATGTACCCGGCCACGTCATCTCCACCTGCTTCAAACacaaggagaagaaaaggaattCCTCATAGGGCTCCTTTTGGCtcttaa 630 0.4476 MDTMLVPPWLEPLLNTPFFNVCRIHGDAARSECNMFCLDCNGDAFCFYCRSSRHKDHQVIQIRRSSYHDVVRVAEIQKVLNISGVQTYVINSARVLFLNERPQPKSGKGVVAHICEICGRSLLDPFRFCSLGCKLVGIKRNGDASFALDAKNEASAMEGMSRRSVSSRHHQEEELREGSQQDMYPATSSPPASNTRRRKGIPHRAPFGS 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2499 209 MobiDBLite consensus disorder prediction 157 209 - -
Ssu7g2499 209 SUPERFAMILY B-box zinc-binding domain 19 64 - -
Ssu7g2499 209 Pfam PLATZ transcription factor 63 135 IPR006734 -
Ssu7g2499 209 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 2 208 - -
Ssu7g2499 209 MobiDBLite consensus disorder prediction 163 179 - -
Ssu7g2499 209 MobiDBLite consensus disorder prediction 181 195 - -
Ssu7g2499 209 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 2 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2499 Ssu-Chr7 48979300 48980660 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF PLATZ Ssu7g2499 PLATZ 4.9e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2499 - - gmx:100809455 407.912
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0942 4 14984944 14986270 Ssu7g2499 7 48979300 48980660 PCT