Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2492 ATGGAATCCACCGCCACCGTTTCGCCCGATTCCGAAAACGACGCCACCAAGACGCAGCACCAGCGAGTGAACGGCTACGTCGTTTACGCTCGCCGAAAGAGGACCCTCCATTCTGATAATGACACCGCCAAGAGGCTCAAAACCGCCCACAATGCTGAAATTAAAGTGGAAGCTCGCGAGGCGGCGCTCGACGACGCCGTTTTCGGGGCGTTCAAGGTCGAGTCCGAAGACGGTGCCGTTGCGAATGCCGAGGAATTAACGAAGGTGGAGTTGAAGACCTCGAAGAAGATCATCGTGGTCAACAAGAAGCCCGTGACCGTGAAGGAGCTCTTCGAAACTGGCTTGCTCGATGGGGTTCCGGTCGTTTACGTCGGTTGCAAGAAGGATTCAACTTCGGGATTACGGGGTGTAATTAAAGATGGGGGGATCTTGTGCTCGTGCCGTCTGTGCAATGGACGCAGAGTTATTCCACCTTCCCAATTCGAGATTCATGCATGCAACATATATAAGAGGGCAGCACAATATATTTGCCTTGAAAATGGGAAGAGCCTGCTTGAACTATTGAGAGCATGCAGGGCAGCTCCGCTACATACTTTGGAGGCGaccattcaaaattttgttagttcTCCGCCTGAGGAGAAATATTTTACTTGCAAAAGTTGCAGAGGGTGTTTCCCTTCTTCCAATGTGGAAAGAGTGGGGCTTTTATGTCTATCTTGCGTGGAATCAAGGAAATCTGAAGACAGTTCTATTCATGCTGTTGGCAAAAGAGTCAGGTCCCCTCGGCCAGTATTATTCTCCCGTTCATGTTCATGTTGTACTTCTGAACTGTGTATCTCTCCGCAATCTAAGAGACACTGGAAGACAAGAACAAAGTCATCAAAACTGTCGGTAAAATTGAAGACTGCTCCGATTACTTCAAAGTGTTTATCTCCACAAAATAAAAGTCAGTGGAGGATCTCTAAAAGGCATCAACGATTACATAAATTAATCTTTGAAGAGGATGGATTGCCCAATGGAGCTGAAGTAGCTTATTATGCACGTGGACAGAAATTGCTTGAGGGTATCAAAACGCGGTCTGGAATTGTCTGTCGATGCTGCAACACCGAGATCAGCCCCTCACAGTTTGAGGTCCATGCAGGCTGGGCTTCTCGCAGGAAACCTTATGCATCCATCTACACGTCAAATGGGGTGTCACTCCATGAGTTAGGAATATTTCTCTCAAAAGATCACAAATGCACTACAAAGCAGAATGATTATGTATGTGTTGTTTGTTGGGATGGTGGAAACCTGTTGCTTTGTGATGGATGTCCAAGGGCATTTCATAAAGAATGTGCATCTGTATCAAGTATTCCTCGGGGTGAGTGGTACTGTCAAATTTGTCAACACATGTTCCTCAGAGAAAGGCCTGTGTTATACAATGCTGATGCTGTGGCAGCTGGAAGGGTAGAAGGTGTTGATCCTATTGAGCAGATTGCCAAGAGATGTATTCGCATAGTAAAAGACATAGGAGCTGAGATTGGTGGATGTGTTTTATGCAGGAGTTCTGACTTCAGCAGATCAGGATTTGGTCCTCGCACAATTATAATCTGTGATCAGTGTGAAAAGGAATATCATGTTGGCTGCTTGAGGGATCATAAGATGGCATATTTGAAGGAGTTGCCAGAAGGGGATTGGCTTTGTTGCAATGATTGCACAAGAATACATTCTACTTTGGAGAATCTCCTAGTTAGGGTGGCTGAGAGACTCCCTGAATCTCTTTTGGATGTTATAAAGAAGAAGCAAGTGGAAAGATGTTTAGAACCCCTTAATGAGATTGATGTAAGATGGAAACTTCTTAATGGAAAAATTGCGTCTCCTGAAACTAGGCCATTGCTTTTGGAGGCAGTGTCCATGTTTCATGAATGCTTTGATCCTATAGTTGATCCAGCTGCTGGACGAGACCTTATTCCTGCCATGGTTTATGGAAGGAATTTGCAGACTCAGGATTTTGGAGGAATGTATTGTGCATTATTGATTGTCAATTCATCTGTGGTATCCGCGGGCATGCTTCGAATTTTCGGTGAAGATATTGCCGAACTCCCATTAGTTGCAACAAGATATAAGAACCGTGGAAAGGGCTACTTCCAAACACTTTTCTCGTGCATCGAGAGGCTGCTGGCTTTCTTGAATGTGAAAAATCTTGTGCTACCGGCTGCTGAAGAAGCAGAATCTATATGGACAGAAAAATTCGGGTTTAGCAAGATGAAACCCGACCAGCTTACCAACTATAGAATGAACTGCCATCAGATAATGGCATTCAAAGGGACAATTATGCTTCATAAAACGGTGCCTCGATGTCGGGTTATCAATACTCAATCATGCGAAGTCTGTATACAGGAAAGTCAATCGTGA 2394 0.447 MESTATVSPDSENDATKTQHQRVNGYVVYARRKRTLHSDNDTAKRLKTAHNAEIKVEAREAALDDAVFGAFKVESEDGAVANAEELTKVELKTSKKIIVVNKKPVTVKELFETGLLDGVPVVYVGCKKDSTSGLRGVIKDGGILCSCRLCNGRRVIPPSQFEIHACNIYKRAAQYICLENGKSLLELLRACRAAPLHTLEATIQNFVSSPPEEKYFTCKSCRGCFPSSNVERVGLLCLSCVESRKSEDSSIHAVGKRVRSPRPVLFSRSCSCCTSELCISPQSKRHWKTRTKSSKLSVKLKTAPITSKCLSPQNKSQWRISKRHQRLHKLIFEEDGLPNGAEVAYYARGQKLLEGIKTRSGIVCRCCNTEISPSQFEVHAGWASRRKPYASIYTSNGVSLHELGIFLSKDHKCTTKQNDYVCVVCWDGGNLLLCDGCPRAFHKECASVSSIPRGEWYCQICQHMFLRERPVLYNADAVAAGRVEGVDPIEQIAKRCIRIVKDIGAEIGGCVLCRSSDFSRSGFGPRTIIICDQCEKEYHVGCLRDHKMAYLKELPEGDWLCCNDCTRIHSTLENLLVRVAERLPESLLDVIKKKQVERCLEPLNEIDVRWKLLNGKIASPETRPLLLEAVSMFHECFDPIVDPAAGRDLIPAMVYGRNLQTQDFGGMYCALLIVNSSVVSAGMLRIFGEDIAELPLVATRYKNRGKGYFQTLFSCIERLLAFLNVKNLVLPAAEEAESIWTEKFGFSKMKPDQLTNYRMNCHQIMAFKGTIMLHKTVPRCRVINTQSCEVCIQESQS 797
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2492 797 ProSitePatterns Zinc finger PHD-type signature. 422 461 IPR019786 -
Ssu7g2492 797 PANTHER AUTOIMMUNE REGULATOR 30 783 - -
Ssu7g2492 797 ProSiteProfiles Zinc finger PHD-type profile. 419 464 IPR019787 -
Ssu7g2492 797 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 508 568 IPR013083 -
Ssu7g2492 797 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 407 483 IPR013083 -
Ssu7g2492 797 SUPERFAMILY FYVE/PHD zinc finger 409 464 IPR011011 -
Ssu7g2492 797 Pfam Tify domain binding domain 356 403 IPR032308 -
Ssu7g2492 797 Pfam Tify domain binding domain 136 191 IPR032308 -
Ssu7g2492 797 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN 30 783 - -
Ssu7g2492 797 SUPERFAMILY FYVE/PHD zinc finger 504 563 IPR011011 -
Ssu7g2492 797 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 665 750 IPR016181 -
Ssu7g2492 797 MobiDBLite consensus disorder prediction 1 23 - -
Ssu7g2492 797 SMART PHD_3 509 566 IPR001965 -
Ssu7g2492 797 SMART PHD_3 421 462 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2492 Ssu-Chr7 48830538 48846314 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2492 94 784 PHD Transcription Factor Family AT2G36720 50.685 0.0 749
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2492 - - gmx:100798276 1427.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0944 4 15053837 15061425 Ssu7g2492 7 48830538 48846314 PCT