Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2487 ATGTTGATCTTACTTGTTGGGAGATTCAAGGGAAAAAGAGTTGTTTTCCTAAAGCAGCTTCCATCTGGGTTGCTTCTTGTAACAGGTCCTTTCAAGATCAATGAGGTTCCTCTTAGAAGGGTGAATCAATCATATGTCATTGGTACATCCACAAAGGTGGATATCTTTGGTGTTAATGTTGATAAATTTGATGACAAGTACTTTGCCAAAGAagccaagaaaaagaaaaccaaggGAGAAGGCAAGTTCTTTAAGGCAAAGAAGGAGGCTAAAAATGTGCTGCCTCAAGAGAAGAAAGATGACCAAAAAATCGTGGCACTGCTTTTTTAA 330 0.3576 MLILLVGRFKGKRVVFLKQLPSGLLLVTGPFKINEVPLRRVNQSYVIGTSTKVDIFGVNVDKFDDKYFAKEAKKKKTKGEGKFFKAKKEAKNVLPQEKKDDQKIVALLF 109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2487 109 Pfam Ribosomal protein L6e 33 105 IPR000915 GO:0003735|GO:0005840|GO:0006412
Ssu7g2487 109 SUPERFAMILY Translation proteins SH3-like domain 2 82 IPR008991 -
Ssu7g2487 109 PANTHER 60S RIBOSOMAL PROTEIN L6 2 105 - -
Ssu7g2487 109 PANTHER 60S RIBOSOMAL PROTEIN L6 2 105 IPR000915 GO:0003735|GO:0005840|GO:0006412
Ssu7g2487 109 Gene3D - 1 79 IPR014722 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2487 Ssu-Chr7 48752886 48756536 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2487 1 105 Cytoplasmic Ribosomal Protein Gene Family AT1G74060 78.095 6.52e-41 133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2487 K02934 - gmx:100784101 142.895