Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2484 atgaaaacgtACTTTTGTTACATTGATAAATTGAGTGtcggaagaagagaaaaagggagtgagaataaaatgCCCAAGCTCGAAGCCTCAGCCCAGAAGTCACCGAAGTTTTATCTCGCCAACAATGTGAGGAAGCCCCTCACCAACAAGCACAAACCCAAACCCGCCAAACTCAGGGTCTTATATATTTGGTTTGCTTTGGTCTTCAAGGCTAGCATTACTTCGGGGACAGTGTTGATCCTGCTCTCTTGGAGATTCAAGGGGAAAAGGGTTGTTTTCCTGAAGCAGCTACCATCTAGGTTGCTTCTTGTAACAGGTATCAATGGGGTTCCTCTCAGAAGGGTGAACCAATCATATGTCATTGGTACATCCACCAAAGTGGATATAGCTATTGTTAATGTTGATAAATTTGATGACAAGCACTTTGTGAGGAagccaagaaaaagaaaacaaagggaGGAGGCGAGTTCTTTGAGGTATAGAAGGAGTTTGGAGAAAAATGTGCTTccccaagaaaagaaagatgacCAAAAAATGGTGGACATTGCTTTGTTAAAGGCCATCGAGAGTGTTCCGGACCTAAAGTCTTACTTGGGTGCTAGGTTTTCTTTGAAAGTGGGAATGAAGCCTCGTGAGCTAGTCTTCTAG 648 0.3765 MKTYFCYIDKLSVGRREKGSENKMPKLEASAQKSPKFYLANNVRKPLTNKHKPKPAKLRVLYIWFALVFKASITSGTVLILLSWRFKGKRVVFLKQLPSRLLLVTGINGVPLRRVNQSYVIGTSTKVDIAIVNVDKFDDKHFVRKPRKRKQREEASSLRYRRSLEKNVLPQEKKDDQKMVDIALLKAIESVPDLKSYLGARFSLKVGMKPRELVF 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2484 215 Gene3D - 71 150 IPR014722 -
Ssu7g2484 215 PANTHER 60S RIBOSOMAL PROTEIN L6 24 215 IPR000915 GO:0003735|GO:0005840|GO:0006412
Ssu7g2484 215 SUPERFAMILY Translation proteins SH3-like domain 72 154 IPR008991 -
Ssu7g2484 215 Pfam Ribosomal protein L6e 107 215 IPR000915 GO:0003735|GO:0005840|GO:0006412
Ssu7g2484 215 CDD KOW_RPL6 54 215 IPR041997 -
Ssu7g2484 215 PANTHER 60S RIBOSOMAL PROTEIN L6 24 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2484 Ssu-Chr7 48679951 48681676 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2484 26 215 Cytoplasmic Ribosomal Protein Gene Family AT1G74060 62.176 4.27e-68 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2484 K02934 - gmx:100811720 254.603