Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2474 ATGGCGGTTCCAGGGAGGCGCAACGGCATGAACGACGACGAAGAGGACTTAGACGACAACGCCCTTTTCGAAGAAGAAGGTCTCATCGAAGAAGACGACACCGATACCCCTCCTCACCTCCGAGACCTCTCCGCCGCCGCTCAGCTCGGCGACCTCCACGCCCTCCGCCTCGCTCttgATAACTTGACCGGTAGTATTGATGAGCCAGTGGAGGATGGGGATACAGCTCTTCATTTGACCTGTTTATATGGCCATTCGGCTTGTGTTCAGCTGCTTCTAGAGAGAGGAGCGAACATTGAGGCTAAGGATGAAGAGGGTGCAATTCCGTTGCATGATGCTTGTGCAGGAGGGTATATGGAGATAGTCCAACTGCTACTTAACAGAGCTAATGATGCAGAACATATAAAAAGAATGCTAGAATCAGTTGATTCTGAGGGTGATACTCCTCTCCATCATGCTGCAAGAGGTGAGCATGTTGATGTAATTAGGTTGTTGCTGTCTAATGGCGCATTGTCCACAAAGGCAAACTTATATGGAAAGACCCCGGCAGATTTACCTGATCAGGACACAGATTCTAGGAGGCTGCTTGAAGCTGCCGCTACTGCCATGGCATGCTAA 618 0.5016 MAVPGRRNGMNDDEEDLDDNALFEEEGLIEEDDTDTPPHLRDLSAAAQLGDLHALRLALDNLTGSIDEPVEDGDTALHLTCLYGHSACVQLLLERGANIEAKDEEGAIPLHDACAGGYMEIVQLLLNRANDAEHIKRMLESVDSEGDTPLHHAARGEHVDVIRLLLSNGALSTKANLYGKTPADLPDQDTDSRRLLEAAATAMAC 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2474 205 ProSiteProfiles Ankyrin repeat profile. 72 104 IPR002110 GO:0005515
Ssu7g2474 205 ProSiteProfiles Ankyrin repeat profile. 145 170 IPR002110 GO:0005515
Ssu7g2474 205 ProSiteProfiles Ankyrin repeat profile. 105 137 IPR002110 GO:0005515
Ssu7g2474 205 Pfam Ankyrin repeats (3 copies) 105 170 IPR002110 GO:0005515
Ssu7g2474 205 Pfam Ankyrin repeats (3 copies) 43 103 IPR002110 GO:0005515
Ssu7g2474 205 Gene3D - 37 204 IPR036770 -
Ssu7g2474 205 ProSiteProfiles Ankyrin repeat region circular profile. 145 170 - -
Ssu7g2474 205 ProSiteProfiles Ankyrin repeat region circular profile. 72 104 - -
Ssu7g2474 205 ProSiteProfiles Ankyrin repeat region circular profile. 105 131 - -
Ssu7g2474 205 PANTHER SOWAH (DROSOPHILA) HOMOLOG 1 204 - -
Ssu7g2474 205 PANTHER SOWAH (DROSOPHILA) HOMOLOG 1 204 - -
Ssu7g2474 205 SMART ANK_2a 105 134 IPR002110 GO:0005515
Ssu7g2474 205 SMART ANK_2a 72 101 IPR002110 GO:0005515
Ssu7g2474 205 SMART ANK_2a 145 175 IPR002110 GO:0005515
Ssu7g2474 205 SUPERFAMILY Ankyrin repeat 43 185 IPR036770 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2474 10 188 Ion Channels AT2G25600 30.049 4.98e-15 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2474 - - gmx:100527544 361.303
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g2474 7 48231757 48233662 Ssu7g2474 7 48231757 48233662 ECH