Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2473 atgcaAGTCCAAGAGGAATTACTTGTGGTTTCCAAGGATCACACGCAGATGATCATCAAAGGCAAGCGCACCAAGCGTCAAAGGGCACCATCCCCTCTTAGGCTAGCCATGCCTAATTCATCCTCAAGTAGCACTAACAATTCCATTGATAGTGCCACAACCTCGCCCGTCACCACCACAATTGAATTGAGAGAGGAGGAAGACATGGCCAATTGCCTCATTCTCTTGGCTCAAGGCAGACACCACGTGACAGCACCCACACCacatcacaacaacaacaataacaacaacaacaacaacgacaagTCGAGCCTATACCTTTACCAGTGCAAGACTTGCAACAGATGCTTCCCTTCATTCCAAGCACTTGGTGGACACAGAGCCAGCCACAAGAGGCCTAAGCAAAACGGCACTTTTTCAGAAGCAGTTACTACTTTTGTGAACATTGAAGAGAATGATCGTTATGACCCCACCACAAGTACCACCCTCTCCTTGAAAATGCCAAACGGGGTTAATAATAATGTGTGTAGCACCAGCACTGCCACCACTACAAAAGCAAAAGTTCACGAGTGTTCCATCTGTGGTGCTGAATTCTCATCTGGGCAAGCCTTGGGGGGCCATATGAGGCGGCACAGAACTCTTGTGAACGCTTACTCTGTGACAACGTCTGCTAGTGGTGGAAATGTTGGTGGTGGTAGCCATGAAAACCAAGAAGCCAAGAAACCCTTGAAGTTGGACTTGAATCTTCCAGCACCAGATGATGATCACGGAGAGTCCAAGTTTTCGTTTCCGCAAAGAGAAAACGTTATTGTCTTCTCTACGTCTTCTTTGGTGGATTGCCATTACTGA 849 0.4511 MQVQEELLVVSKDHTQMIIKGKRTKRQRAPSPLRLAMPNSSSSSTNNSIDSATTSPVTTTIELREEEDMANCLILLAQGRHHVTAPTPHHNNNNNNNNNNDKSSLYLYQCKTCNRCFPSFQALGGHRASHKRPKQNGTFSEAVTTFVNIEENDRYDPTTSTTLSLKMPNGVNNNVCSTSTATTTKAKVHECSICGAEFSSGQALGGHMRRHRTLVNAYSVTTSASGGNVGGGSHENQEAKKPLKLDLNLPAPDDDHGESKFSFPQRENVIVFSTSSLVDCHY 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2473 282 ProSitePatterns Zinc finger C2H2 type domain signature. 110 130 IPR013087 -
Ssu7g2473 282 ProSiteProfiles Zinc finger C2H2 type domain profile. 189 211 IPR013087 -
Ssu7g2473 282 Gene3D Classic Zinc Finger 105 211 - -
Ssu7g2473 282 PANTHER ZINC FINGER PROTEIN ZAT5 9 282 - -
Ssu7g2473 282 MobiDBLite consensus disorder prediction 34 56 - -
Ssu7g2473 282 MobiDBLite consensus disorder prediction 21 56 - -
Ssu7g2473 282 SMART c2h2final6 189 211 IPR013087 -
Ssu7g2473 282 SMART c2h2final6 108 130 IPR013087 -
Ssu7g2473 282 ProSitePatterns Zinc finger C2H2 type domain signature. 191 211 IPR013087 -
Ssu7g2473 282 ProSiteProfiles Zinc finger C2H2 type domain profile. 108 135 IPR013087 -
Ssu7g2473 282 Pfam C2H2-type zinc finger 188 212 - -
Ssu7g2473 282 Pfam C2H2-type zinc finger 108 133 - -
Ssu7g2473 282 PANTHER GATA ZINC FINGER DOMAIN-CONTAINING PROTEIN 15-LIKE 9 282 - -
Ssu7g2473 282 SUPERFAMILY beta-beta-alpha zinc fingers 107 211 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2473 Ssu-Chr7 48222384 48223232 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2473 10 282 C2H2 Transcription Factor Family AT2G28200 41.311 1.19e-59 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ssu7g2473 zf-C2H2_6 1.1e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2473 - - gmx:100815595 402.905
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g2473 7 48222384 48223232 Ssu7g1230 7 27134585 27136153 ECH
Ssu7g2473 7 48222384 48223232 Ssu7g2473 7 48222384 48223232 ECH
Ssu7g2473 7 48222384 48223232 Ssu8g0622 8 10175428 10176321 ECH
Ssu4g0970 4 15478605 15479441 Ssu7g2473 7 48222384 48223232 PCT