Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2472 ATGGCGTTCCGCAGGGCCCAAGAGGCCGCTCGCGGCGACACCTGGAGAGCCGCTCTCTCCGAATTCATCTCCACACTCATCTTCGTCTTCGCCGGCTCCGGCTCCGCCATCGCCGTCAACAAGCTACCCGTCGACGCGCCCACCGCCCTCGTCGTCACAGCCGTCGCCCACGCCTTCGCCCTCTTCGCTGCCGTCTCCGGCGGCGCCAACATCTCCGGCGGCCACGTCAACCCCGCCGTCTCCTTCGGCGCCTTCGTCGGCGGCAACCTCACCTTGCTCCGCTGCGTCCTCTTCTGGATCGCCCAGCTCCTCGGCTCCATCGTCGCCTGCTTGCTCCTCAAACTCGCCACCGGAAAGGGTGTGCCGGTTTTTGAAATTTCGAGTGGGGTGGGGGTGGAAAACGCGGTGGTGTTGGAGATGGTGATGACGTTCGGGTTGGTGTGTGCGGTGTACGCGACTAACGTTGACCCCAGGAGCAGGAGGAGGGGTAATTTGGGAACGATCGCGCCAATTGTGATTGGGTTCATCGTTGGAGCGAACATTTTGGTGGGTGGGCCTTTTGATGGGGCCTCCATGAACCCGGCTGTGTCGTTTGGGCCTGCATTGGTGGGCTGGAGTTGGAAAAACCATTGGGTTTACTGGGTTGGGCCTCTCGTTGGTGGTGGGCTTGCTGGGTTTATGTATGAGCTGGTCTTTGTTAGCCACAGCCGACAGAGGTGA 720 0.6167 MAFRRAQEAARGDTWRAALSEFISTLIFVFAGSGSAIAVNKLPVDAPTALVVTAVAHAFALFAAVSGGANISGGHVNPAVSFGAFVGGNLTLLRCVLFWIAQLLGSIVACLLLKLATGKGVPVFEISSGVGVENAVVLEMVMTFGLVCAVYATNVDPRSRRRGNLGTIAPIVIGFIVGANILVGGPFDGASMNPAVSFGPALVGWSWKNHWVYWVGPLVGGGLAGFMYELVFVSHSRQR 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2472 239 Pfam Major intrinsic protein 12 228 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu7g2472 239 PANTHER AQUAPORIN TIP1-1 2 237 - -
Ssu7g2472 239 SUPERFAMILY Aquaporin-like 10 236 IPR023271 -
Ssu7g2472 239 Gene3D Glycerol uptake facilitator protein. 1 239 IPR023271 -
Ssu7g2472 239 PANTHER AQUAPORIN-8 2 237 IPR034294 -
Ssu7g2472 239 PRINTS Major intrinsic protein family signature 138 156 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu7g2472 239 PRINTS Major intrinsic protein family signature 174 196 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu7g2472 239 PRINTS Major intrinsic protein family signature 94 113 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu7g2472 239 PRINTS Major intrinsic protein family signature 211 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu7g2472 239 PRINTS Major intrinsic protein family signature 16 35 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu7g2472 239 PRINTS Major intrinsic protein family signature 57 81 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu7g2472 239 ProSitePatterns MIP family signature. 75 83 IPR022357 -
Ssu7g2472 239 CDD MIP 16 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2472 Ssu-Chr7 48203483 48204417 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2472 1 239 Major Intrinsic Protein MIP AT2G36830 66.667 1.39e-108 311
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2472 K09873 - gmx:100820403 382.489
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0971 4 15521917 15522887 Ssu7g2472 7 48203483 48204417 PCT