Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2468 ATGCTCCAAACAACCTGCATTTTACTCTTCTCCCTTCTGGCCTCATTTTTACCTCATGGAACAGCAATGCTCAACCTCACTCTCCCCGGACAGCATCCAGACCCCGAAGCCGTTGCCCGAGAAGTTCACAGGATGGTGAATGCTTCAATTGCAAGAAGGGAAGTGCTGGGAGTGTCAGAGAAAGAGGTGGCATCGTGTCTAACAGGGAACCCCATCGACGATTGTTGGAAATGTGACCCAAATTGGGCCAACAACAGGCAGAGGCTAGCTGATTGCGCAATTGGGTTTGGGCAGAACGCAAAGGGGGGAAAGGGTGGGCAATTTTACATAGTCACTGATTCCTCAGATGAGGACCCTGTGAACCCAAAACCTGGCACGCTTAGATATGCAGTGATACAGAATGAGCCACTGTGGATCGTGTTCCCCAGTAACATGATGATTAAGCTGTCTCAGGAGCTCATATTTAACAGCTACAAGACCATTGATGGCCGTGGCGCTGATGTGCACATTGTGGGTGGAGGCTGCATTACCCTTCAGTATATTAGTAATGTCATCATACACAACATTCACATCCACCATTGCCATCCCTCTGGTAACGCCAACGTGCGGTCTAGTCCAGAGCACTACGGGTACCGGACGGAGTCGGACGGCGACGGCATCTCGATATTCGGTTCGCGCGACATCTGGGTGGACCACTGCACGCTGTCGCGGTGCAAGGACGGGCTCATCGACGCGGTGATGGGGTCAACGGCGATAACGATCTCCAACAGCCACTTTTCGCACCACAACGACGTGATGCTGCTGGGGCACAGCGACCACTACCTGGCGGACTCGGCGATGCAGGTGACGATCGCGTTCAACCACTTCGGCGAGGGGCTCGTGCAGCGCATGCCGCGGTGCAGGCTGGGGTACATCCACGTGGTGAACAACGACTTCACGCGGTGGGAGATGTACGCCATCGGGGGCAGCGGCGGCCCCACCATCAACAGCCAGGGGAACCGCTACACCGCGCCGGAGGACCCCTACGCGAAGCAGGTCACCAAGAGGCTCGACGCCGGGGAAGGGGAGTGGAGCGGCTGGAATTGGAGGTCCGAAGGGGATGTCATGTTGAACGGGGCCTTCTTCGTTGCTTCGGGGGGCGATGCCGAACCTAACTACCATAATGCCTACAGCGTGGAGCCCAAGTCCGTCGATCGCATCTCGCTACTCACCATGTCCGCTGGTGTTCTCGGGGTTGCTAGGGACAATAATCTGGGAATGTGGACCAGAGGACCCAATGAAGGTGGCGTTTATATTTCAGATTTTGGCCCAGAATACACAGACGACATGTCCCGGAGTGCAGTGCCGTTGCTACCATCACGTACTTTGATTCTTGTATCTGCATTTGTTGCATTGTTGTACTTCTTATGTCATACAACAACCTTAACAACAGTTCTATAA 1440 0.5451 MLQTTCILLFSLLASFLPHGTAMLNLTLPGQHPDPEAVAREVHRMVNASIARREVLGVSEKEVASCLTGNPIDDCWKCDPNWANNRQRLADCAIGFGQNAKGGKGGQFYIVTDSSDEDPVNPKPGTLRYAVIQNEPLWIVFPSNMMIKLSQELIFNSYKTIDGRGADVHIVGGGCITLQYISNVIIHNIHIHHCHPSGNANVRSSPEHYGYRTESDGDGISIFGSRDIWVDHCTLSRCKDGLIDAVMGSTAITISNSHFSHHNDVMLLGHSDHYLADSAMQVTIAFNHFGEGLVQRMPRCRLGYIHVVNNDFTRWEMYAIGGSGGPTINSQGNRYTAPEDPYAKQVTKRLDAGEGEWSGWNWRSEGDVMLNGAFFVASGGDAEPNYHNAYSVEPKSVDRISLLTMSAGVLGVARDNNLGMWTRGPNEGGVYISDFGPEYTDDMSRSAVPLLPSRTLILVSAFVALLYFLCHTTTLTTVL 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2468 479 PRINTS Pollen allergen Amb family signature 92 109 IPR018082 -
Ssu7g2468 479 PRINTS Pollen allergen Amb family signature 318 337 IPR018082 -
Ssu7g2468 479 PRINTS Pollen allergen Amb family signature 216 237 IPR018082 -
Ssu7g2468 479 PRINTS Pollen allergen Amb family signature 389 412 IPR018082 -
Ssu7g2468 479 PRINTS Pollen allergen Amb family signature 296 315 IPR018082 -
Ssu7g2468 479 PRINTS Pollen allergen Amb family signature 360 384 IPR018082 -
Ssu7g2468 479 PRINTS Pollen allergen Amb family signature 152 168 IPR018082 -
Ssu7g2468 479 PRINTS Pollen allergen Amb family signature 116 141 IPR018082 -
Ssu7g2468 479 Gene3D - 69 411 IPR012334 -
Ssu7g2468 479 Pfam Pectate lyase 153 321 IPR002022 -
Ssu7g2468 479 PANTHER PECTATE LYASE 1 434 - -
Ssu7g2468 479 SMART amb_all 144 341 IPR002022 -
Ssu7g2468 479 PANTHER PECTATE LYASE 18-RELATED 1 434 IPR045032 GO:0030570
Ssu7g2468 479 SUPERFAMILY Pectin lyase-like 60 389 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2468 Ssu-Chr7 48125341 48131908 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2468 1 472 Polysaccharide Lyase AT3G53190 69.792 0.0 654
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2468 K01728 - gmx:100815062 900.197
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g2468 7 48125341 48131908 Ssu7g2468 7 48125341 48131908 ECH
Ssu4g0975 4 15595846 15599160 Ssu7g2468 7 48125341 48131908 PCT