Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2467 ATGCAAGGAGAACATTTGCGTAGAGGGTCTTGGCTACAAGAGGAAGATGAACAATTGACTAGCTTTGTGGCCCTTCTTGGGGAAAGAAGATGGGATTCCCTTGCCAAACTAGCTGGCCTCAGGAGAAGTGGTAAAAGCTGTAGGTTAAGATGGATGAACTATCTTCGTCCAAATCTCAAGCATGGTCCTTTTAGTGTTGAAGAAGAACAGCTTATTGTTCAGCTTCAGCAGAAATTGGGTAACAAGTGGGCAAAGATTGCTCAGAAACTTCCAGGAAGAACTGACAACGAAATCAAGAATTACTGGAGAACTCATTTGAGAAAACGAGCTCGAGTTCAACAAGAAGTCTCAGGAGATTTCAAAGATAAATTAGAAATTGCAACACAAGATTTCAACCAGAAAAGCATTGATATGGTTTCCAAGGATTACAACCGTGGAAACGTGTGCTGTCAGGATAGTGAGTGGGAGACAAAGGATAGCTCCATAGACACTTTACCCTTATCAGATTGGGAATTGAGAAGCTCGCCCTTTGAAACTAGGATATTGGATTGGATAGCAGAATTGCAAGATGGATATGGTgagaaagaacaagaacaagattGTAGTAGTACAGGAACGTTCAACTATAATCCTCAAGAATTTGCCGAGGGATGTGACTCATGGGATTATTCAGGTTCCCTGTGGGATATGAGCTAA 696 0.4066 MQGEHLRRGSWLQEEDEQLTSFVALLGERRWDSLAKLAGLRRSGKSCRLRWMNYLRPNLKHGPFSVEEEQLIVQLQQKLGNKWAKIAQKLPGRTDNEIKNYWRTHLRKRARVQQEVSGDFKDKLEIATQDFNQKSIDMVSKDYNRGNVCCQDSEWETKDSSIDTLPLSDWELRSSPFETRILDWIAELQDGYGEKEQEQDCSSTGTFNYNPQEFAEGCDSWDYSGSLWDMS 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2467 231 Pfam Myb-like DNA-binding domain 8 55 IPR001005 -
Ssu7g2467 231 Pfam Myb-like DNA-binding domain 62 106 IPR001005 -
Ssu7g2467 231 Gene3D - 1 61 - -
Ssu7g2467 231 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 56 110 IPR017930 -
Ssu7g2467 231 CDD SANT 63 106 IPR001005 -
Ssu7g2467 231 SUPERFAMILY Homeodomain-like 6 102 IPR009057 -
Ssu7g2467 231 Gene3D - 63 123 - -
Ssu7g2467 231 PANTHER MYB TRANSCRIPTION FACTOR 3 230 - -
Ssu7g2467 231 SMART sant 7 57 IPR001005 -
Ssu7g2467 231 SMART sant 60 108 IPR001005 -
Ssu7g2467 231 ProSiteProfiles Myb-like domain profile. 56 106 IPR001005 -
Ssu7g2467 231 CDD SANT 10 55 IPR001005 -
Ssu7g2467 231 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 3 55 IPR017930 -
Ssu7g2467 231 ProSiteProfiles Myb-like domain profile. 3 55 IPR001005 -
Ssu7g2467 231 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 3 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2467 Ssu-Chr7 48114819 48116284 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2467 4 111 MYB Transcription Factor Family AT5G59780 61.111 9.32e-46 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ssu7g2467 Myb_DNA-binding 9.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2467 K09422 - gmx:100783472 404.445
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g2467 7 48114819 48116284 Ssu7g2467 7 48114819 48116284 ECH