Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2461 ATGTCTACCTCCGCGGCTTTTCTCGCACTCCCCACTCTCACTCTCCGAACCCGACAACCTCTGTGCTCTCCCCAATGCTTCTCCTCTTCCCTCGCCCTCACCCCTAACAACAAACCCCTCTCCATCTCAGCCGTTTTCCTCAAACCAACGTTGTCGTTGTCGTCTCGCTTCGTTCCCCGCGTTGCTGTTTCCTCGGAGTTGGAGCAGGAAGAGGATGCCCTCAGCGACGGAGACAGCCCTAGCTTCTCCCCGGACCTCAAGCTCTTTGTCGGGAACCTTCCATTCAGCGTCGACAGCGCGCAACTCGCCGAGCTCTTCGAAAACGCGGGGAATGTGGAGATGGTTGAGGTGATTTATGATAAGACGACTGGGAGAAGCAGGGGGTTTGGGTTTGTGACCATGTCTTCCACTGAGGAGGTTGAAGCGGCTGCGCAGCGGTTCAATGGCTATGAACTGGAGGGAAGGGCATTGAGAGTGAGTTCTGGGCCACCTCCTGCTCGGAATGAGAGTTCTCCTCAATTTAGAGGTTCTTccagaggtggtggtggtggtttttTGGATAGTGAAAACCGTGTTCATGTAGGTAATCTTGCTTGGGGTGTTGACAATTTAGCACTCGAGTCATTGTTTCGTGAGCAAGGAAAGGTCTTGGAAGCCAAGGTAATCTATGACAGGGAAAGTGGACGATCAAGAGGCTTTGGATTTGTGACTTACAGTAGCCCTGAAGAGGTCAACAGTGCAATTCGGTCCTTAGACGGTGTGGACTTGAATGGCAGAGCTATCCGAGTCTCAATAGCAGATTCTAAGCCCAAGCGGTTTTGa 822 0.5097 MSTSAAFLALPTLTLRTRQPLCSPQCFSSSLALTPNNKPLSISAVFLKPTLSLSSRFVPRVAVSSELEQEEDALSDGDSPSFSPDLKLFVGNLPFSVDSAQLAELFENAGNVEMVEVIYDKTTGRSRGFGFVTMSSTEEVEAAAQRFNGYELEGRALRVSSGPPPARNESSPQFRGSSRGGGGGFLDSENRVHVGNLAWGVDNLALESLFREQGKVLEAKVIYDRESGRSRGFGFVTYSSPEEVNSAIRSLDGVDLNGRAIRVSIADSKPKRF 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2461 273 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 88 158 IPR000504 GO:0003723
Ssu7g2461 273 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 193 262 IPR000504 GO:0003723
Ssu7g2461 273 PANTHER OS02G0815200 PROTEIN 1 273 - -
Ssu7g2461 273 PANTHER 29 KDA RIBONUCLEOPROTEIN, CHLOROPLASTIC 1 273 - -
Ssu7g2461 273 SUPERFAMILY RNA-binding domain, RBD 81 184 IPR035979 GO:0003676
Ssu7g2461 273 SMART rrm1_1 191 264 IPR000504 GO:0003723
Ssu7g2461 273 SMART rrm1_1 87 160 IPR000504 GO:0003723
Ssu7g2461 273 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 190 268 IPR000504 GO:0003723
Ssu7g2461 273 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 86 164 IPR000504 GO:0003723
Ssu7g2461 273 CDD RRM_HP0827_like 87 160 - -
Ssu7g2461 273 MobiDBLite consensus disorder prediction 158 182 - -
Ssu7g2461 273 SUPERFAMILY RNA-binding domain, RBD 187 272 IPR035979 GO:0003676
Ssu7g2461 273 Gene3D - 62 185 IPR012677 -
Ssu7g2461 273 Gene3D - 186 272 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2461 Ssu-Chr7 47990354 47992954 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2461 88 272 Eukaryotic Initiation Factors Gene Family AT1G49760 27.568 6.36e-12 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2461 - - gmx:100786275 436.417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g2461 7 47990354 47992954 Ssu7g2461 7 47990354 47992954 ECH
Ssu4g1082 4 17180438 17187923 Ssu7g2461 7 47990354 47992954 PCT