Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2459 ATGGATGCAGCTAATGGCAACGCGGCACACCACGATGCCACATTTTGTTTGAGTGCCGGTAACGTTAGCAGTGGGGACCCCTTGAACTGGGGTGCTGCGGCTGAGGCCATGAAGGGGAGCCACCTGGAGGAGGTGAAGCGCATGGTGGCGGAGTACCGGAGGCCGGCGGTGCGGCTCGGCGGCGAGACGCTCACGATCTCGCAGGTGGCCGCGATCGCGGCGCACGACCAGGGGGTGAAGGTGGAGCTGGCGGAGTCCGCCAGGGCCGGCGTTAAGGCCAGCAGCGACTGGGTGATGGACAGCATGGACAAGGGCACTGACAGCTACGGAGTCACCACCGGGTTCGGTGCCACCTCCCACCGCCGAACCAAACAAGGTGGTGCCTTGCAGAAGGAGCTAATTAGgTTTTTGAATGCTGGAATATTTGGCAATGGTACAGAGTCCAATTGTACCCTACCCCACACAGCAACCAGAGCAGCTATGCTAGTGAGAATTAACACACTTCTTCAAGGGTATTCAGGAATTAGGTTTGAAATTTTGGAGGCTATCACTAAGCTTCTGAACAACAACATTACCCCATGCTTGCCACTTAGGGGTACAATTACAGCTTCTGGTGATCTTGTTCCTTTGTCTTACATTGCCGGTTTGCTAACTGGTAGACCAAACTCCAAGGCTGTTGGACCCTCTGGGGAGATTCTGAATGCCAAGGAAGCCTTTGAATTGGCCAACATTGGTTCTGAGTTCTTTGAGTTGCAACCTAAGGAAGGCCTTGCCCTTGTTAATGGTACTGCTGTTGGTTCTGGCTTGGCTTCTATTGTTCTCTTTGAGGCAAACATCCTTGCTGTCTTGTCTGAAGTTATTTCAGCAATTTTTGCTGAAGTGATGCAAGGGAAGCCTGAGTTCACTGACCATTTGACACATAAGCTAAAGCACCACCCTGGACAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGAAGCTCCTACATCAAAGCAGCTAAGAAGTTGCATGAGATTGATCCTTTGCAAAAGCCTAAACAAGATCGCTATGCCCTTAGGACTTCACCCCAGTGGCTTGGTCCTCAAATTGAAGTGATCAGGTTTTCCACCAAGTCaattgagagagagataaaCTCGGTCAACGACAACCCTTTGATTGATGTGTCAAGGAACAAGGCCCTGCATGGTGGTAACTTCCAAGGAACTCCTATTGGAGTCTCCATGGATAACACCCGTTTGGCTCTTGCATCAATTGGCAAACTCATGTTTGCTCAATTCTCTGAGCTTGTCAATGACTATTACAACAACGGTTTGCCCTCAAATCTCACTGCCAGCAGAAACCCCAGCCTGGATTATGGTTTCAAGGGAGCTGAAATTGCCATGGCATCTTACTGCTCTGAACTCCAATACTTAGCAAACCCAGTAACCAGCCATGTCCAAAGTGCTGAGCAGCATAACCAAGATGTGAACTCTTTGGGCTTGATTTCATCTAGAAAAACACATGAGGCTATTGAGATTCTCAAGCTCATGTCTTCCACTTTCCTCATTGCACTTTGCCAAGCCATTGACTTGAGGCATTTGGAGGAGAATTTGAAGAACACTGTCAAGAACGTTGTGAGCCAAGTTGCCAAGAGGACTCTCACCACAGGTGTCAATGGAGAACTTCACCCTTCCAGATTCTGTGAGAAAGACTTGCTGAAAATTGTTGATAGGGAGTACACATTTGCCTACATTGATGACCCCTGCAGTGGCACATACCCATTGATGCAAAAACTAAGGCAAGTGCTTGTGGACTATGCATTGGCCAATGGGGAGAGCGAGAAAAACTCGAGCACATCAATCTTCCAAAAGATTGCAACATTTGAGGAAGAGTTGAAGGCCCTCTTGCCTAAGGAGGTGGAAGGTGCGAGGGTGGCATATGAAAATGGCCAATGTGCAATTcccaacaaaattaaggaatGCAGGTCTTACCCGCTGTACAAGTTTGTGAGAGAGGAGTTGGGGACATCGTTGCTAACTGGAGAGAAGGTCACATCACCGGGTGAGGAGTGTGACAAACTGTTCACTGCAATGTGCCAAGGGAAAATCATTGATCCTATCTTGGAATGCCTTGGAGAGTGGAATGGTGCTCCTCTTCCTATTTGTTAG 2154 0.4814 MDAANGNAAHHDATFCLSAGNVSSGDPLNWGAAAEAMKGSHLEEVKRMVAEYRRPAVRLGGETLTISQVAAIAAHDQGVKVELAESARAGVKASSDWVMDSMDKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGTESNCTLPHTATRAAMLVRINTLLQGYSGIRFEILEAITKLLNNNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPSGEILNAKEAFELANIGSEFFELQPKEGLALVNGTAVGSGLASIVLFEANILAVLSEVISAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYIKAAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLALASIGKLMFAQFSELVNDYYNNGLPSNLTASRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTHEAIEILKLMSSTFLIALCQAIDLRHLEENLKNTVKNVVSQVAKRTLTTGVNGELHPSRFCEKDLLKIVDREYTFAYIDDPCSGTYPLMQKLRQVLVDYALANGESEKNSSTSIFQKIATFEEELKALLPKEVEGARVAYENGQCAIPNKIKECRSYPLYKFVREELGTSLLTGEKVTSPGEECDKLFTAMCQGKIIDPILECLGEWNGAPLPIC 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2459 717 CDD PAL-HAL 62 527 IPR001106 -
Ssu7g2459 717 Gene3D - 17 263 IPR024083 -
Ssu7g2459 717 PANTHER HISTIDINE AMMONIA-LYASE 19 717 IPR001106 -
Ssu7g2459 717 Pfam Aromatic amino acid lyase 64 544 IPR001106 -
Ssu7g2459 717 PANTHER PHENYLALANINE AMMONIA-LYASE 1-LIKE 19 717 - -
Ssu7g2459 717 Gene3D Fumarase/aspartase (Central domain) 264 712 - -
Ssu7g2459 717 TIGRFAM phe_am_lyase: phenylalanine ammonia-lyase 26 706 IPR005922 GO:0005737|GO:0006559|GO:0016841
Ssu7g2459 717 SUPERFAMILY L-aspartase-like 26 717 IPR008948 GO:0003824
Ssu7g2459 717 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 199 215 IPR022313 GO:0016841
Ssu7g2459 717 Gene3D - 530 651 IPR023144 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2459 Ssu-Chr7 47830331 47834525 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2459 3 717 Monolignol Biosynthesis Gene Families AT2G37040 82.083 0.0 1248
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2459 K10775 - gmx:100803857 1345.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g2459 7 47830331 47834525 Ssu7g1082 7 23830893 23835073 ECH
Ssu7g2459 7 47830331 47834525 Ssu7g2459 7 47830331 47834525 ECH