Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2456 ATGGGGGGTCGAGTCATATCTTGTGCTGCTTGTGAGCACCGTTGTGAATGGGCTTTGTGGTCTTCTTTGCATGAAGGTTGCTCCATTCCAAGTGATGTTCCAAAGGGTCACTTGGTTGTGTACGTAGGAGAGAACCACAAGAGATATGTCATCAAGATTGCATTGCTCCATCATCCACTCTTCAGGGCCTTGTTGGATCAAGCTCAGGAAGAGTATGATTTCATTGCAGATTCAAAACTCTGTATTCCTTGTGATGAACACCTCTTCCTTAGTGTCCTTCGATGTGCAAGCTCCCCACAGAACCAACGAGTGTGTCTGTGTCTTTGA 327 0.4618 MGGRVISCAACEHRCEWALWSSLHEGCSIPSDVPKGHLVVYVGENHKRYVIKIALLHHPLFRALLDQAQEEYDFIADSKLCIPCDEHLFLSVLRCASSPQNQRVCLCL 108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2456 108 Pfam Auxin responsive protein 28 95 IPR003676 GO:0009733
Ssu7g2456 108 PANTHER AUXIN-RESPONSIVE FAMILY PROTEIN 18 108 - -
Ssu7g2456 108 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 18 108 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2456 Ssu-Chr7 47790731 47791057 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2456 31 103 Calmodulin-binding Proteins AT4G34750 50.649 2.84e-21 80.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2456 K14488 - gmx:100812927 197.978
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g2456 7 47790731 47791057 Ssu7g2456 7 47790731 47791057 ECH
Ssu4g1009 4 16159019 16159390 Ssu7g2456 7 47790731 47791057 PCT