Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2455 ATGGATCAGGAAGAATATTTGCGGAAGTGTTCCAATATGAAATGCCAAAGAGTTCAGGTGGATGAATCATATGTACCTGCTCTTCAAGATGAAGTAATGGAAGTTGAGCATTTGCTTGCAGAACCCAGAAATGATCATACTTCCGTGGATggtatattacattttaatgagGAGAATACAGGGAAATGCTATGATGCCGAAAATCTTTCCTGTGGATTTGAATTTGGTTTAAAATCAAGTAGTGGTAGTTTGGATTCTCATACAACTTTGAATGGCAAGGATGATTTAGAACTGGAGGTCCTTGATGGATTTCTGGATGATGTTGAAATCGATGATCTTGAAGGAACTGATGGTTTCGATGGTGCATGTGGAGaatattttttggATTTTGAATTTGCTGACAAAGCTGAAGAGGTAATGGGCTCTGGTCCTTTTGAAGGTTCACTCTTGCAAAACTCAAGTTCAGAAAGTCATTCTTCGGGATTAAGTGGAAGTAGCATTGTTGGTGGGGTATTAGAATCGACAAAAGTACCTATTGCACTATCTGAATGCAAAAATGATTCTCTAGATGAGACAGTAACCTATGAATCACATGGTGCCTTCAGGAACAATCCAAATCAACCATCAAAAGTAAATTGCAGGTACAACATTTCACGTGATAAGCAACATCTGCAAGAGTTGGATAACCGTCACCATTTTGTTGGTGGTATATTGACTTGTAAGATGGAAAATGGTCCTGTCGAAAAATGCCAACCTGCTGCACTTAGAGAGAAGAGATTCCGAAAGCCTACTCAGAGGTATATtgaagaattttcaaattcgaGGTCAAAGGAAAAGGTACCAATTGCTGGTACAAAAACTAAACATTTAAGAGACTCATCATGTAATGTACTTCATATAAGAATTAAAGCATTGAAAAAGAGTCCAGGCGAGAAGTCTAGTAACGAAGATAGTGACGTGATACTTCCTGAGTTGCAAGTTTGCAAAGGGCATCTGAAGACAGAGAAACTTGAGTACGACACTGAGTCAATTCCCTCAGAATCTGAGGATGGATGTCTGACATCAAAAAGATCTAGAAGGAAAGATCGAAGAAAGCATCAAAGGATGTGGACTCTGCCTGAAGTGATCAAGTTGGTTGACGGCATATCTGAATATGGAGTTGGTCGATGGACTGATATAAAGAGGTTTTTGTTTTCCTCTTCAAGCTACCGAACTCCCATAGATCTCAGGGACAAGTGGCGAAACCTTTTGAGAGCCAGTTCTGCACAGAAAAACAAGAGAGAGGATGAGCAAAATGACGAGCTTGCCCTGCGTCCCTTGCCATTTAATGTGGTAAATCGTGTGCGTGAATTGGCTAAAATTCACCCATACCCAAGGCAACGTGGGTCAAACAAGTTGCGTGTTAGCCAAGCTGGCTCTTCTGTCATTGCTAAAGATTCTCCTCCCGTTAGTCTTAGCAAAAGAAATGTACGTAGGAAGAATTGTACTTAG 1491 0.3937 MDQEEYLRKCSNMKCQRVQVDESYVPALQDEVMEVEHLLAEPRNDHTSVDGILHFNEENTGKCYDAENLSCGFEFGLKSSSGSLDSHTTLNGKDDLELEVLDGFLDDVEIDDLEGTDGFDGACGEYFLDFEFADKAEEVMGSGPFEGSLLQNSSSESHSSGLSGSSIVGGVLESTKVPIALSECKNDSLDETVTYESHGAFRNNPNQPSKVNCRYNISRDKQHLQELDNRHHFVGGILTCKMENGPVEKCQPAALREKRFRKPTQRYIEEFSNSRSKEKVPIAGTKTKHLRDSSCNVLHIRIKALKKSPGEKSSNEDSDVILPELQVCKGHLKTEKLEYDTESIPSESEDGCLTSKRSRRKDRRKHQRMWTLPEVIKLVDGISEYGVGRWTDIKRFLFSSSSYRTPIDLRDKWRNLLRASSAQKNKREDEQNDELALRPLPFNVVNRVRELAKIHPYPRQRGSNKLRVSQAGSSVIAKDSPPVSLSKRNVRRKNCT 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2455 496 MobiDBLite consensus disorder prediction 339 366 - -
Ssu7g2455 496 Pfam Myb-like DNA-binding domain 370 417 IPR001005 -
Ssu7g2455 496 SUPERFAMILY Homeodomain-like 368 435 IPR009057 -
Ssu7g2455 496 MobiDBLite consensus disorder prediction 455 496 - -
Ssu7g2455 496 Gene3D - 355 467 - -
Ssu7g2455 496 SMART sant 366 419 IPR001005 -
Ssu7g2455 496 MobiDBLite consensus disorder prediction 463 480 - -
Ssu7g2455 496 ProSiteProfiles Myb-like domain profile. 362 417 IPR001005 -
Ssu7g2455 496 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 362 421 IPR017930 -
Ssu7g2455 496 CDD SANT_TRF 368 418 - -
Ssu7g2455 496 PANTHER MYB-LIKE DNA-BINDING DOMAIN CONTAINING PROTEIN, EXPRESSED 8 494 - -
Ssu7g2455 496 PANTHER TRF-LIKE 8 8 494 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2455 Ssu-Chr7 47779014 47784554 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2455 370 426 Single Myb Histone (SMH) Gene Family AT1G17520 42.373 8.66e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2455 - - gmx:100810255 744.962
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g2455 7 47779014 47784554 Ssu7g2455 7 47779014 47784554 ECH