Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2454 ATGAGGAACTATATTTCTTggcttccttttcttttcttgttgatCCTTTTCTTGTCACCGATTCAATGCGCCGATAACACTTTCGCCCCCTCCTTTTACTCCGAAGAAATATACAAGGAACTTGAAAACCTCGCTTCCCTATTAAACAAGGACATTAAAGCAAGCTTAGGTTTCTGCATCAAGGATGTGAAAAAAGATTGGGAGGAATCATTTGATTTTAAAGGAAGGTTGGATTTTGTGGATTCTTGTGTTAAGAAAAAAGGAGATTTCAGAGATAGAATATGTACTGTGGCTGAAATAAGGTACTACTTCCACGGTTTCTTGGAACAAGGGGCATCATCTACCAATTATGTAAAACCTAACAAGAATTGCAATTTGACCTCGTGGGTTTCTGGCTGTGAACCTGGATGGAGTTGTAGTGCTGGTAAAAGTGTTGACCTAAAAAAAGACGTAAAGGACATTCCTTTTAGAACCAATAACTGCCAGCCTTGTTGTGAAGGGTTTTTCTGCCCTCAAGGATTGACTTGCATGATACCTTGCCCACTAGGTTCTTATTGTCCACTTGCAAAACTGAACAATGAGACTGGAATATGTGACCCATATAGTTACCAAATACCTCAAGGAGAAACAAATCATACTTGTGGCAGTGCTGATATTTGGTCTGGTGTGGTGAACAATAGTGATATCTTTTGTTCTCCAGGATCATACTGCCCTACTACAACACGTAAAGTTTCTTGTGATAGTGGAAATTATTGCAGGATGGGTTCTACTCACCAAAAtcCATGCTCCAAGTTGAGTAGCTGTAATTCAAGTACAGCAACCCAAAATATGCATGCTTATGGTGCTTTGCTTATTGTTGCATTGAGTACTCTCCTGATCTTCATTTATAATTGTTCTGATCAAGTTCTTGTTACTCGAGAAAGGAGGAAGGCTAAATCTAGGGAAGCTGCTGCTAGACAAGTAAGAGAAACTGTACAGGCTCGAGAAAGGTGGAAAATAGCAAAAGATGTTGCTAAGAAAGGTAAGGTGGGATTGCAAGAGCAATTATCTCGCACCTTTTCTCGCAAAAAATCAACAAGGCAATCAGAGCAATTAAAGGTTTCTAGCCAAGCTAAACGTGGTATGGGTGATACATTTTTGCCACCAATGCCTCCAAATGCTTCAAGCATTTATGAGCAGTCATCTGCAGCGTCAAAAGAGCAAAATAAGGAACCTACCAACCTTACTAAAATGTTGAATTCCCTTGAGAATGACCCACATAGCAATGAAGGATTCAATCTACAAATtggagataaaaatattaaaaagcagATGCCAAAAGGCAAACAGTTACAAACACAAAGCCAAATTTTAAGGTATGCTTATGGTCAGATTGAGAAGGAGAAAGCTCAACAAGAGAAAAACAAGAACTTGACTTTCTCGGGAGTTATTTCAATGGCTACTGGAGGTGAGGTTCGAACAAGGCCTGTGATTGAGGTAGCTTTTAAAGATTTAACTCTTACTttgaaagggaaaagaaaacatCTACTGAGATGTGTGAGTGGTAAACTCATGCCTGGTCGAGTTTCTGCTGTGATGGGTCCCTCAGGAGCTGGCAAAACAACATTTCTTTCTGCCTTGGCAGGTAAAGCAAGAGGATGCACTATGACTGGCTCAATTCTAATCAATGGAAAAGTCGAATCCATTCACTGTTATCAGAAAATTATTGGTTTTGTGCCACAAGATGATATTGTGCATGGAAACTTGACCGTGGAGGAAAATCTTCGTTTCAGTGCAAGATGCAGACTATCTGCGGATATGCCAAAGCCAGATAAGGTTTTGATTGTTGAAAGAGTAATTGAGTCCTTAGGACTCCAAGCAGTGAGGGATTCCCTTGTTGGGACAGTAGAAAAGCGAGGTATATCTGGAGGGCAACGAAAACGTGTAAATGTAGGGATGGAGATGGTTATGGAGCCTTCATTATTAATCTTAGACGAGCCTACAACTGGCCTAGACAGTGCATCTTCCACTTTACTGCTTAAAGCACTTCGTCGGGAAGCGCTTGAAGGGGTAAATATCTGCATGGTACTTCACCAACCAAGCTATACTTTGTTCAGAATGTTTGATGATATAATCTTTCTAGCCAAAGGTGGCCTTACTGCATATCATGGTCCTgttaaaaaagtagaagaatACTTTGCTAGCATTGGAATTAGTGTACCTGATCGTGTGAATCCTCCGGACCATTTCATTGACATTTTGGAAGGCTTAGTGAAACCAAGTGGAGGTGTGACCCATCAACAACTTCCTGTCAGATGGATGTTACATAATAGTTACCCAGTACCGCCAGATATGCTTCATTATGCTGATCAAATTGCTGCCTCCTCCTCCTCCCCCTCAAATATAAATGATGCAACAAAGGGCAAAAATGAAGTTACTGATCAATCCTTTGCCGGAGAGTTTTGGGAGGATATGAAGAGTAGTGTTCAGATCCAACGAGATCATATAGAGGCAACCTTCTTAAAGACTAAGGACTTATCTAATCGAAGAACTCCTGGTGTAGCTCGACAATATAGATATTACCTTGGGCGGATTTGTAAGCAGACGCTACGAGAAGGAAAATCACAAGCAGTTGACTATCTCCTTTTATTGGTTGCTGGTGCAATATTAGGAACTCTTACTAAAGTAAATGACGAAACATTTGGGTCCCTCGGATATACATATACTGTTATTGCTGTCTCTTTACTTTGCAAGATTGCAGCTCTCAGATCATTTTCTCTAGATAAATTACAGTACTGGAGGGAGAGTGCATCTGGAATTAGCAATCTGGCTCATTTTTTGTCCAAAGATACAATTGATCTTTTCAATACAATCATCAAACCTGTAGTTTATTTGTCcatgttctatttttttagcAATCCAAGGTCCAGCTTCGCAAGTAATTATGTGGTTTTGCTTTGCCTTGTATACTGTGTGACTGGCATGGCTTATGCAATAGCAATTTATTTTGAACCTGCTCCAGCACAGCTGTGGTCAGTGCTTCTCCCAGTTGTTATGACTCTCATGGCGAACCAGACAAAAGATACCCTTTTTATGAAGATCCTCGTAAAGTTGTGCTACCCAAATTGGGCTTTGGAAGCCTTTATCATTGCAAATGCTGAAAGGTACACTGGAGTCTGGCTGATAACTCGGTGTAGTTCACTAATGAATAGCGGCTACAATGTCAGTGACTGGCCTCTTTGTCTGTTAGTCCTCATTTTTTACGGTATAATTGCTCGAGTCGTGGCCTTCTTTTGTCTAGTGATCACTCAAAAGAAGTGA 3300 0.3939 MRNYISWLPFLFLLILFLSPIQCADNTFAPSFYSEEIYKELENLASLLNKDIKASLGFCIKDVKKDWEESFDFKGRLDFVDSCVKKKGDFRDRICTVAEIRYYFHGFLEQGASSTNYVKPNKNCNLTSWVSGCEPGWSCSAGKSVDLKKDVKDIPFRTNNCQPCCEGFFCPQGLTCMIPCPLGSYCPLAKLNNETGICDPYSYQIPQGETNHTCGSADIWSGVVNNSDIFCSPGSYCPTTTRKVSCDSGNYCRMGSTHQNPCSKLSSCNSSTATQNMHAYGALLIVALSTLLIFIYNCSDQVLVTRERRKAKSREAAARQVRETVQARERWKIAKDVAKKGKVGLQEQLSRTFSRKKSTRQSEQLKVSSQAKRGMGDTFLPPMPPNASSIYEQSSAASKEQNKEPTNLTKMLNSLENDPHSNEGFNLQIGDKNIKKQMPKGKQLQTQSQILRYAYGQIEKEKAQQEKNKNLTFSGVISMATGGEVRTRPVIEVAFKDLTLTLKGKRKHLLRCVSGKLMPGRVSAVMGPSGAGKTTFLSALAGKARGCTMTGSILINGKVESIHCYQKIIGFVPQDDIVHGNLTVEENLRFSARCRLSADMPKPDKVLIVERVIESLGLQAVRDSLVGTVEKRGISGGQRKRVNVGMEMVMEPSLLILDEPTTGLDSASSTLLLKALRREALEGVNICMVLHQPSYTLFRMFDDIIFLAKGGLTAYHGPVKKVEEYFASIGISVPDRVNPPDHFIDILEGLVKPSGGVTHQQLPVRWMLHNSYPVPPDMLHYADQIAASSSSPSNINDATKGKNEVTDQSFAGEFWEDMKSSVQIQRDHIEATFLKTKDLSNRRTPGVARQYRYYLGRICKQTLREGKSQAVDYLLLLVAGAILGTLTKVNDETFGSLGYTYTVIAVSLLCKIAALRSFSLDKLQYWRESASGISNLAHFLSKDTIDLFNTIIKPVVYLSMFYFFSNPRSSFASNYVVLLCLVYCVTGMAYAIAIYFEPAPAQLWSVLLPVVMTLMANQTKDTLFMKILVKLCYPNWALEAFIIANAERYTGVWLITRCSSLMNSGYNVSDWPLCLLVLIFYGIIARVVAFFCLVITQKK 1099
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2454 1099 SMART AAA_5 519 711 IPR003593 -
Ssu7g2454 1099 Gene3D - 485 731 IPR027417 -
Ssu7g2454 1099 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 493 734 IPR003439 GO:0005524
Ssu7g2454 1099 MobiDBLite consensus disorder prediction 351 404 - -
Ssu7g2454 1099 CDD ABCG_EPDR 491 717 - -
Ssu7g2454 1099 Pfam ABC-2 type transporter 691 1099 IPR043926 GO:0140359
Ssu7g2454 1099 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 493 716 IPR027417 -
Ssu7g2454 1099 Pfam ABC transporter 512 661 IPR003439 GO:0005524
Ssu7g2454 1099 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 27 1095 - -
Ssu7g2454 1099 MobiDBLite consensus disorder prediction 387 404 - -
Ssu7g2454 1099 ProSitePatterns ABC transporters family signature. 634 648 IPR017871 GO:0005524
Ssu7g2454 1099 PANTHER WHITE-BROWN COMPLEX HOMOLOG PROTEIN 30-RELATED 27 1095 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2454 Ssu-Chr7 47742927 47755065 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2454 520 713 Calmodulin-binding Proteins AT2G36910 28.218 9.00e-10 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2454 - - gmx:100812387 2006.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g2454 7 47742927 47755065 Ssu7g1100 7 24371142 24380073 ECH
Ssu7g2454 7 47742927 47755065 Ssu7g2454 7 47742927 47755065 ECH