Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2453 ATGAAGTGTCTTCCATTCTGCTTTGGAGAGAAGAAGGATGGTCCTAAGGGCTTACAATCAACATCGGGGCGGTCCAACAGTTCTACTTATGTTGAGGCTGAGATGAGAAGATCTGGTTCTGAATTGAACTCTATGGATGCCTCAGACAACAGCACAGACTCCCTCAGGAGAAGTGCATTTCCCAGTTTGTCTCAAAGACCCAGCAACCTCAGAGTATTTACTGTATCTGAGTTAAAAACAGCCACAAGGAGCTTTAGTCGCTCTGTCATGCTTGGGGAGGGTGGGTTCGGGTGTGTCTACAAGGGGTTGATCAAGAGTGTAGATGATCCTTCCACAAAAATTGAAGTAGCGGTTAAACAACTTGGCAGAAGAGGAATTCAGGGGCATAAGGAATGGGTGACAGAAGTGAATGTTTTGGGTATTGTGGAGCATCCCAATCTGGTGAAACTAGTGGGTTATTGTGCTGATGATGATGAAAGAGGAATCCAGCGGCTTCTGATTTATGAATATATGCCCAACACAAGTGTGGAACACCATTTATCACCACGATCAGAAACTCCTCTCCCATGGAGTAGGAGATTGAAAATAGCCCAAGATGCGGCTCGTGGCTTAACATACCTGCATGAGGAAATGGATTTCCAGATAATTTTCAGAGATTTCAAATCTTCAAATATCCTTCTGGATGAGCAGTGGAATGCAAAGCTGTCAGACTTTGGCCTAGCAAGATTGGGACCATCTGATGGGTTAACTCACGTCTCAACAGCGGTTGTAGGAACAATGGGTTATGCAGCTCCTGAATATGTTCAAACTGGACGTCTCACATCAAAGAGTGATGTATGGAGCTATGGTGTCTTCCTTTATGAACTCATTACCGGCAGGCGTCCTATTGATCGAAATCGCCCCAAGGGTGAGCAGAAGCTGTTGGAATGGGTAAGGCCATACCTTTCAGATGGgaggaaatttcaaataatattggATCCAAGACTTGAGAGGAAACACCTCTTCAAGTCAGCCCAAAAACTTGCTATAGTAGCAAACAGATGTTTGGTTAGAAATCCAAAGAATCGCCCAAAGATGAGTAAGTGTTACAAATGGTGA 1098 0.4372 MKCLPFCFGEKKDGPKGLQSTSGRSNSSTYVEAEMRRSGSELNSMDASDNSTDSLRRSAFPSLSQRPSNLRVFTVSELKTATRSFSRSVMLGEGGFGCVYKGLIKSVDDPSTKIEVAVKQLGRRGIQGHKEWVTEVNVLGIVEHPNLVKLVGYCADDDERGIQRLLIYEYMPNTSVEHHLSPRSETPLPWSRRLKIAQDAARGLTYLHEEMDFQIIFRDFKSSNILLDEQWNAKLSDFGLARLGPSDGLTHVSTAVVGTMGYAAPEYVQTGRLTSKSDVWSYGVFLYELITGRRPIDRNRPKGEQKLLEWVRPYLSDGRKFQIILDPRLERKHLFKSAQKLAIVANRCLVRNPKNRPKMSKCYKW 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2453 365 MobiDBLite consensus disorder prediction 11 59 - -
Ssu7g2453 365 ProSiteProfiles Protein kinase domain profile. 85 365 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu7g2453 365 Gene3D Transferase(Phosphotransferase) domain 1 171 365 - -
Ssu7g2453 365 MobiDBLite consensus disorder prediction 41 59 - -
Ssu7g2453 365 MobiDBLite consensus disorder prediction 18 34 - -
Ssu7g2453 365 PANTHER KINASE 1B 12 361 - -
Ssu7g2453 365 ProSitePatterns Protein kinases ATP-binding region signature. 91 119 IPR017441 GO:0005524
Ssu7g2453 365 Pfam Protein tyrosine and serine/threonine kinase 90 363 IPR001245 GO:0004672|GO:0006468
Ssu7g2453 365 Gene3D Phosphorylase Kinase; domain 1 59 170 - -
Ssu7g2453 365 PANTHER OS01G0588500 PROTEIN-RELATED 12 361 - -
Ssu7g2453 365 CDD STKc_IRAK 91 360 - -
Ssu7g2453 365 SUPERFAMILY Protein kinase-like (PK-like) 61 363 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2453 Ssu-Chr7 47734025 47736709 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2453 1 360 Glycoside Hydrolase AT3G07070 43.817 1.62e-92 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Ssu7g2453 PK_Tyr_Ser-Thr 4.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2453 - - gmx:100305438 690.649
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1006 4 16124238 16127204 Ssu7g2453 7 47734025 47736709 PCT