Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2451 ATGACCTCATCACAAGTTGTCCTACACAACAATTTCTCTCACTCAGAAACTAAACCCTCCGCCACCGAGTCCCCGCCCAACACCCACCTCGCCGTCGCGAAGAAGCCCTCCGCCGCCGCCGCGCGCTCCACCAAGGACCGCCACACCAAGGTCAACGGCCGCGGCCGCCGCGTCCGCATGCCGCCACTCTGCGCCGCCCGCATTTTCCAGCTCACGCGCGAGCTCGGCCACCGCTCCGACGGCGAGACCATCGAGTGGCTCCTCCGGCACGCCGAGCCCTCCATCATCGCCGCCACCGGCTCCGGCACCGTCCCCGCAGCCCCCGTCTCCTCCGTCGTCCGCCGCGGCGCCCTCCTCCGAACCCTCCGTCGCCTGCCCCGTCACGGCGGTCGCCGGCGGGCAGGGGATGTTCGCCGTGGCTCCGCCGCAGCAGCCGAGTTGCCGGCTGGACCTGTGCCCGCCGCCGGGGATGGAGTTCGCCGCGGTGAATGGGTACCGGCACATGCCGTTCACGGCGCTGCTGCTGCAGCCCACGACGGCGGAGGATAA 549 0.7104 MTSSQVVLHNNFSHSETKPSATESPPNTHLAVAKKPSAAAARSTKDRHTKVNGRGRRVRMPPLCAARIFQLTRELGHRSDGETIEWLLRHAEPSIIAATGSGTVPAAPVSSVVRRGALLRTLRRLPRHGGRRRAGDVRRGSAAAAELPAGPVPAAGDGVRRGEWVPAHAVHGAAAAAHDGGG 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2451 182 MobiDBLite consensus disorder prediction 1 56 - -
Ssu7g2451 182 PANTHER TRANSCRIPTION FACTOR TCP16-RELATED 25 109 - -
Ssu7g2451 182 Pfam TCP family transcription factor 43 111 IPR017887 -
Ssu7g2451 182 ProSiteProfiles TCP domain profile. 44 98 IPR017887 -
Ssu7g2451 182 MobiDBLite consensus disorder prediction 127 154 - -
Ssu7g2451 182 MobiDBLite consensus disorder prediction 1 27 - -
Ssu7g2451 182 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 25 109 IPR005333 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2451 Ssu-Chr7 47685842 47686390 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2451 17 106 TCP Transcription Factor Family AT3G47620 66.667 2.83e-35 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Ssu7g2451 TCP 1.9e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2451 - - vun:114191143 174.096