Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2436 ATGGCATTAATAAAGAATGCAATGAAAGGATATGTTGCTGTTCTTGCAATCAAAGATGGAGAAACTAAAAGGTTTGTTGTTGAGTTAGACTACTTGACTAATCCCGCATTCTTGGGACTATTGGACCAAGCTCGAGAAGAGTACGGTTTCAAACAGCAGGGAACTATAGCACTCCCTTGTCGGCCACAAGAATTACAGAAGATTCTAGACGGTTGGAGGACGAGACCGGACAGCATCAAAGATGCAGGAAGGGATATTTATTTTCCTAAGTTCCTATGA 279 0.4158 MALIKNAMKGYVAVLAIKDGETKRFVVELDYLTNPAFLGLLDQAREEYGFKQQGTIALPCRPQELQKILDGWRTRPDSIKDAGRDIYFPKFL 92
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2436 92 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 6 88 IPR003676 GO:0009733
Ssu7g2436 92 Pfam Auxin responsive protein 7 69 IPR003676 GO:0009733
Ssu7g2436 92 PANTHER SMALL AUXIN-UP RNA-RELATED 6 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2436 Ssu-Chr7 47504838 47505428 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2436 9 69 Calmodulin-binding Proteins AT2G24400 40.984 1.86e-09 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2436 - - ccaj:109813579 156.377