Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2426 ATGTCACAGAATTCTGAGGAGATAAAGACAGTGGAGCAGTGGAGATGGTCTGAAATGCAAGGCCTTGAGCTTGTGTCTTCTTCTGCTCCAATTTCTGACTCACACGAATCCAACCCAACGTTGGAAGAAGAAAGGGTAATGGAGGAGGCTTCAGTGGCCAAGAAGGATGGTGTTTCTAATGGGACATGTCGTGGTGGAAGTGGGAAGAAGGGTGAGAGTGTTGCCTCTGTTGGGTTTGGTGAGCTTTTCAGATTTGCTGATGGGTTGGATTACATTCTGATGGCAATTGGAACGGTTGGAGCATTCGTACATGGCTGCTCCTTGCCACTCTTTCTTCGTTTCTTTGCTGATCTCGTGAATTCCTTTGGTTCCAATGCGAATAACTTGGACAAGATGACCCAGGAAGTGGTGAAGTATGCGTTTTACTTCCTGGTGGTGGGGGCTGCCATATGGGCATCCTCGTGGGCAGAGATTTCGTGCTGGATGTGGACAGGTGAACGGCAATCAACGAGGATGAGAATCAGGTATCTTGAGGCAGCGTTGGACCAGGACATTCAATTCTTTGACACTGAGGTTCGAACATCTGATGTTGTTATTGCCATTAACACTGATGCTGTCATGGTACAAGATGCCATTAGCGAGAAGTTGGGTAATTTCATTCACTATATGGCTACATTTGTTTCTGGCTTTGTTGTGGGTTTCACTGCTGTTTGGCAATTGGCACTGGTTACCCTCGCTGTGGTCCCTATGATAGCTGTAATCGGAGCCATTCACACCACCACCTTGGCCAAGCTATCTAGTAAAAGCCAGGAGGCTCTTTCTCAAGCTGGTAACATTGTGGAACAGACTGTTGTTCAAATTCGAGTGGTGTTGGCGTTTGTTGGGGAGACTAGAGCACTGCAGGCCTATTCCTCTGCGTTAAGGATTGCACAGAAGATTGGCTACAGGACTGGATTTGCAAAGGGAATGGGATTGGGGGCCACTTACTTTGTTGTTTTCTGTTGCTATGCTCTTTTGCTTTGGTATGGAGGCTATTTGGTTAGGCACCACAACACCAATGGAGGACTTGCCATTGCCACCATGTTTTCTGTTATGATTGGTGGATTGGCTTTAGGTCAGTCTGCACCCAGCATGGCTGCATTTACAAAGGCCAGAGTTGCTGCTGCAAAGATTTTCCGTGTGATTGATCACAAACCGGGTATAGATAGAAAGAGTGAATCAGGTTTGGAGTTAGAGAGTGTTACAGGACTAGTAGAGCTGAGAAATGTGGACTTTTCATACCCCTCAAGGCCAGAGGTTCTGATCCTTAACAATTTCTCCTTGAGTGTGCCTGCTGGCAAGACCATTGCTTTGGTAGGGAGCAGTGGCTCAGGCAAGAGCACAGTTGTGTCCCTCATTGAGAGATTCTATGATCCTTCTTCAGGACAAGTGTTGTTAGATGGGCATGATGTTAAGACATTGAAGCTTAGATGGTTGAGACAGCAGATAGGACTAGTGAGCCAAGAGCCTGCTTTGTTTGCTACCACTATTCGAGAAAACATACTCTTGGGTAGGCCTGATGCAGACCAGGTTGAGATTGAAGAAGCTGCCAGAGTGGCTAATGCTCACCCCTTCGTCATCAAACTTACCGAAGGTTATGAAACTCAGgTAGGGGAGAGAGGCCTGCAACTTTCAGGTGGACAAAAGCAAAGAATAGCAATTGCAAGGGCAATGTTGAAAAACCCAGCAATTCTTCTCCTAGACGAGGCAACAAGTGCATTGGACTCGGAGTCAGAAAAGCTGGTTCAGGAGGCCCTTGACCGGTTCATGATTGGCAGAACAACTCTTGTAATTGCTCATCGCCTCTCCACTATTCGCAAAGCTGACCTTGTGGCTGTGCTTCAGCAAGGAAGTGTCACTGAAATTGGAActcatgatgagctctttgctAAAGGTGAAAATGGAGTCTATGCCAAGCTTATCCGGATGCAGGAGATGGCACATGAAACTTCTGTGAGCAATGCCAGAAAGAGTAGTGCAAGGCCTTCAAGTGCCAGAAACTCTGTAAGCTCACCCATAATTGCTCGGAATTCTTCTTATGGCCGGTCGCCGTTCTCACGGAGACTATCTGACTTCTCTAATTCTGATTTTAGCCTGTCCGTTGATGCATCACATACAAATTACAGGCTTGAAAAACTTGCCTTCAAAGATCAAGCCAGTTCCTTCTGGCGACTTGCAAAAATGAACTCCCCTGAATGGCTATATGCCTTAATTGGGTCTATAGGATCTGTTGTTTGTGGATCCCTTAGTGCATTTTTTGCTTATGTTCTTAGTGCTGTCCTCAGTGTCTATTACAATCCAAACCACAGACACATGATCCGAGAAATTGAAAAGTACTGCTACTTGTTGATTGGGCTATCATCAGCTGCACTCCTCTTCAACACATTGCAGCACTTCTTCTGGGATATTGTTGGTGAAAATCTTACAAAACGAGTTAGGGAGAAAATGTTGACTGCAGTGCTTAAAAATGAAATGGCATGGTTTGATCAGGAGGAAAATGAGAGTGCTAGGATTGCAGCAAGGCTATCTCTTGATGCCAACAATGTCAGATCAGCCATTGGAGATCGGATTTCAGTAATTGTGCAGAACACTGCACTTATGCTAGTTGCCTGCACTGCAGGGTTTGTATTGCAATGGCGCCTTGCCCTTGTACTTGTTGCCGTCTTCCCTGTTGTTGTTGCAGCCACTGTTTTGCAGAAAATGTTCATGACTGGTTTCTCTGGTGACCTGGAAGCGGCTCATGCCAAGGCCACACAACTAGCAGGAGAGGCTATAGCCAATGTGAGGACAGTTGCTGCTTTTAAttcagaaaagaaaattgttggCCTTTTCGCCTCCAACCTTGAAACTCCACTGCGGCGGTGCTTTTGGAAGGGACAGATTTCTGGAAGTGGATATGGGATAGCTCAGTTTGCACTCTATGCTTCCTATGCACTTGGTCTTTGGTATGCTTCTTGGCTTGTGAAGCATGGTATATCTGATTTCTCTAAAACAATTCAAGTTTTCATGGTACTCATGGTCTCAGCTAATGGTGCTGCTGAAACTTTAACCCTGGCTCCTGACTTCATCAAGGGTGGTCGCGCCATGAGATCAGTCTTTGATCTCCTTGATCGTAGAACTGAGATTGAGCCAGATGATCCAGATGCTACCCCTGTCCCTGATTGCCTCCGCGGTGAAGTAGAACTTAAGCATGTTGACTTCTCTTATCCAACTAGACCAGATATGTCAGTTTTTTGCGACCTAAGTCTTCGTGCCAGGGCAGGTAAAACTCTTGCCCTTGTAGGGCCTAGTGGCTGTGGTAAGAGCTCAGTCATTGCACTTATACAGAGGTTCTATGATCCAACATCCGGCCGGGTCATGATTGATGGAAAGGACATAAGGAAATATAATCTCAAGTCTCTTAGAAGGCACATTGCTGTGGTACCTCAAGAGCCATGCCTGTTTGCTACTACTATTTATGAGAACATTGCTTATGGGCATGACTCAGCTACTGAAGCTGAGATCATAGAGGCTGCAACTCTTGCCAATGCTCACAAGTTCATATCTTCTCTGCCTGATGGATACAAGACATTTGTTGGTGAGAGGGGAGTTCAACTATCCGGAGGACAAAAGCAAAGAATAGCAATTGCTAGAGCTTTTGTGAGGAAGGCAGAACTTATGCTTCTTGATGAGGCAACAAGTGCACTTGATGCTGAGTCTGAGAGGTCTGTTCAGGAGGCATTAGACCGCGCCTGCTCAGGAAAAACTACCATCATTGTTGCACACAGGCTATCAACTATTAGGAATGCCAATCTCATTGCAGTGATTGATGATGGGAAAGTAGCAGAGCAAGGTTCCCATTCACAGTTGTTAAAAAATCACCCTGATGGGATCTATACACGCATGATCCAATTACAAAGGTTCACAAATAACCAAGTCATTGGGATGGCCTCAGGTTCAAGTTCTTCAACAAGACCAAAAGATGATGAAAGAGAAGGCTAG 4020 0.4532 MSQNSEEIKTVEQWRWSEMQGLELVSSSAPISDSHESNPTLEEERVMEEASVAKKDGVSNGTCRGGSGKKGESVASVGFGELFRFADGLDYILMAIGTVGAFVHGCSLPLFLRFFADLVNSFGSNANNLDKMTQEVVKYAFYFLVVGAAIWASSWAEISCWMWTGERQSTRMRIRYLEAALDQDIQFFDTEVRTSDVVIAINTDAVMVQDAISEKLGNFIHYMATFVSGFVVGFTAVWQLALVTLAVVPMIAVIGAIHTTTLAKLSSKSQEALSQAGNIVEQTVVQIRVVLAFVGETRALQAYSSALRIAQKIGYRTGFAKGMGLGATYFVVFCCYALLLWYGGYLVRHHNTNGGLAIATMFSVMIGGLALGQSAPSMAAFTKARVAAAKIFRVIDHKPGIDRKSESGLELESVTGLVELRNVDFSYPSRPEVLILNNFSLSVPAGKTIALVGSSGSGKSTVVSLIERFYDPSSGQVLLDGHDVKTLKLRWLRQQIGLVSQEPALFATTIRENILLGRPDADQVEIEEAARVANAHPFVIKLTEGYETQVGERGLQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADLVAVLQQGSVTEIGTHDELFAKGENGVYAKLIRMQEMAHETSVSNARKSSARPSSARNSVSSPIIARNSSYGRSPFSRRLSDFSNSDFSLSVDASHTNYRLEKLAFKDQASSFWRLAKMNSPEWLYALIGSIGSVVCGSLSAFFAYVLSAVLSVYYNPNHRHMIREIEKYCYLLIGLSSAALLFNTLQHFFWDIVGENLTKRVREKMLTAVLKNEMAWFDQEENESARIAARLSLDANNVRSAIGDRISVIVQNTALMLVACTAGFVLQWRLALVLVAVFPVVVAATVLQKMFMTGFSGDLEAAHAKATQLAGEAIANVRTVAAFNSEKKIVGLFASNLETPLRRCFWKGQISGSGYGIAQFALYASYALGLWYASWLVKHGISDFSKTIQVFMVLMVSANGAAETLTLAPDFIKGGRAMRSVFDLLDRRTEIEPDDPDATPVPDCLRGEVELKHVDFSYPTRPDMSVFCDLSLRARAGKTLALVGPSGCGKSSVIALIQRFYDPTSGRVMIDGKDIRKYNLKSLRRHIAVVPQEPCLFATTIYENIAYGHDSATEAEIIEAATLANAHKFISSLPDGYKTFVGERGVQLSGGQKQRIAIARAFVRKAELMLLDEATSALDAESERSVQEALDRACSGKTTIIVAHRLSTIRNANLIAVIDDGKVAEQGSHSQLLKNHPDGIYTRMIQLQRFTNNQVIGMASGSSSSTRPKDDEREG 1339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2426 1339 SUPERFAMILY ABC transporter transmembrane region 82 402 IPR036640 GO:0005524|GO:0016021
Ssu7g2426 1339 CDD ABC_6TM_Pgp_ABCB1_D1_like 94 391 - -
Ssu7g2426 1339 MobiDBLite consensus disorder prediction 1320 1339 - -
Ssu7g2426 1339 CDD ABC_6TM_Pgp_ABCB1_D2_like 739 1055 - -
Ssu7g2426 1339 ProSitePatterns ABC transporters family signature. 557 571 IPR017871 GO:0005524
Ssu7g2426 1339 Pfam ABC transporter transmembrane region 751 1020 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu7g2426 1339 Pfam ABC transporter transmembrane region 95 368 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu7g2426 1339 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1073 1309 IPR003439 GO:0005524
Ssu7g2426 1339 SUPERFAMILY ABC transporter transmembrane region 737 1060 IPR036640 GO:0005524|GO:0016021
Ssu7g2426 1339 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 95 383 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu7g2426 1339 Pfam ABC transporter 436 585 IPR003439 GO:0005524
Ssu7g2426 1339 MobiDBLite consensus disorder prediction 25 45 - -
Ssu7g2426 1339 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 409 657 IPR027417 -
Ssu7g2426 1339 CDD ABC_MTABC3_MDL1_MDL2 1073 1312 - -
Ssu7g2426 1339 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1065 1312 IPR027417 -
Ssu7g2426 1339 CDD ABC_MTABC3_MDL1_MDL2 418 657 - -
Ssu7g2426 1339 ProSitePatterns ABC transporters family signature. 1212 1226 IPR017871 GO:0005524
Ssu7g2426 1339 Gene3D - 1065 1320 IPR027417 -
Ssu7g2426 1339 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 750 1037 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu7g2426 1339 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 94 1316 IPR039421 -
Ssu7g2426 1339 PANTHER ABC TRANSPORTER B FAMILY MEMBER 1 94 1316 - -
Ssu7g2426 1339 Pfam ABC transporter 1093 1240 IPR003439 GO:0005524
Ssu7g2426 1339 Gene3D ABC transporter type 1, transmembrane domain 141 1046 IPR036640 GO:0005524|GO:0016021
Ssu7g2426 1339 Gene3D - 416 681 IPR027417 -
Ssu7g2426 1339 SMART AAA_5 1100 1292 IPR003593 -
Ssu7g2426 1339 SMART AAA_5 445 631 IPR003593 -
Ssu7g2426 1339 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 418 654 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2426 Ssu-Chr7 47305574 47311746 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2426 69 1334 Calmodulin-binding Proteins AT2G36910 88.319 0.0 2293
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2426 K05658 - gmx:100806508 2412.88