Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2424 ATGGGTAGAGCTCCTTGTTGTGACAAGGCAAATGTAAAGAAAGGGCCATGGAGTCCTGAAGAAGATGAAATCTTGAAAGAGTACATAGAGAAACATGGGACTGGAGGGAACTGGATTGCCCTCCCACAAAAAGCtgGTTTGAAAAGATGTGGGAAAAGTTGTAGACTCAGATGGCTTAATTATCTCAGACCAAACCTTAAGCACGGCGAGTTTTCTGAAGATGAAGATAGGACAATCTGCACTCTATTTGCTAGCATTGGAAGCagGTGGTCAATAATAGCATCTCAGTTGCCAGGCAGGACTGACAATGATATCAAGAACTACTGGAACACCAAgctcaagaaaaaaatgatgGGAATGAACCCTTCAGCACTGAAGAAACCTCACCAAGTTACCCTTTCATCCATGCCTCAAAACTCAACACCATCTTCATGCTCCTCCTCATCTTCACCATTATCATTCAAAAACAACCACAACTGTTACTACCAACCCCATGTGCCTTTCACAGGCTCTGAGTCCATTTCATACTCAAGTCTTTTGGGTGGCAATTCTTCTACTTCTGCTTATTCCACTTTACAAGAAAGCTCTTTGGGCCTTATTCAGAATTACCAAGTTAATAGTGCCTTTATGTTAGGGGGTGAAACAAGTTGCAGCTCTTCTTCAGATGGGAGCTACAACAATCAGATCAGTCAGGTCAAAGAAGGAGAACTTGGATATGGTGGTGATGGAACTTTTGGTGAGCAGATAGGTGGTCTTAGTTACCTCTCTAGTGGGGTGGAAGATACCCAAAAGTTGATGCCCTCCAATGCTGGTAGGGTTGGTGGGTGGACAGATGAACAAAGTAGATTATGGGGAGAAAGTCCAATAGATTATGGTCTAGAAGAAATTAAACAGCTAATAAGCACTAGTACTTGCAACAACTTTATGTTTGATGACTGCATGACAGGGGAAATGGTCATGTACTACTGA 969 0.4169 MGRAPCCDKANVKKGPWSPEEDEILKEYIEKHGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPNLKHGEFSEDEDRTICTLFASIGSRWSIIASQLPGRTDNDIKNYWNTKLKKKMMGMNPSALKKPHQVTLSSMPQNSTPSSCSSSSSPLSFKNNHNCYYQPHVPFTGSESISYSSLLGGNSSTSAYSTLQESSLGLIQNYQVNSAFMLGGETSCSSSSDGSYNNQISQVKEGELGYGGDGTFGEQIGGLSYLSSGVEDTQKLMPSNAGRVGGWTDEQSRLWGESPIDYGLEEIKQLISTSTCNNFMFDDCMTGEMVMYY 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2424 322 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Ssu7g2424 322 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Ssu7g2424 322 PANTHER OS09G0431300 PROTEIN 1 307 - -
Ssu7g2424 322 Gene3D - 69 140 - -
Ssu7g2424 322 CDD SANT 16 62 IPR001005 -
Ssu7g2424 322 PANTHER TRANSCRIPTION FACTOR RAX3 1 307 - -
Ssu7g2424 322 MobiDBLite consensus disorder prediction 127 148 - -
Ssu7g2424 322 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 117 IPR017930 -
Ssu7g2424 322 MobiDBLite consensus disorder prediction 125 148 - -
Ssu7g2424 322 SMART sant 13 64 IPR001005 -
Ssu7g2424 322 SMART sant 67 115 IPR001005 -
Ssu7g2424 322 Gene3D - 7 68 - -
Ssu7g2424 322 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Ssu7g2424 322 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Ssu7g2424 322 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 66 IPR017930 -
Ssu7g2424 322 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2424 Ssu-Chr7 47257031 47258361 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2424 1 119 MYB Transcription Factor Family AT5G57620 85.714 9.14e-75 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ssu7g2424 Myb_DNA-binding 3.6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2424 K09422 - gmx:100794828 481.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0993 4 15830781 15832214 Ssu7g2424 7 47257031 47258361 PCT