LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu7g2416	ATGGGTTCTGATAGATCAAGATCTGTGAGATTTCAAGATGAACTTGAGACAAATAAGTTAATGGACAAGGGAAACAAAGGAAGTCACTTATCAATGGTGGCCTATGAGATGAGTGGCAAACACAAGAAGGTTGGGAAGGATGCAGTAGGCAAGTCCTCTGATGGAAGAGAACTTTCCAGGGTCTTTTCTGAGGATTATGATGCAGCACAGATTTTGATATTGGATCCTAGGGGATCTAGAGTAAATACATGGAACAAAATTTTCTTAGCAGCTTGTTTGATTTCATTATTTGTGGATCCCCTATTCTTTTACTTACCAGTGGCTAAGAAAGACAAGTGCATTGATATGTCACCTGGTCTTGAAGTGTCCCTCACCATAATCCGGACTTTGATTGATGCATTTTACATTATTCAGATTTATTTTCGATTTCAAACTGCTTACATTGCTCCTTCCTCTCGTGTTTCTGGTAGAGGAGAGCTTATCATAGACTCTTCAAAAATTGCATCAAAGTACATGCGAAGAGACTTCTGGCTTGATCTAGTGGCTGCTCAACCACTTCCACAGGTATTGATTTGGGCGGTAATTCCAAATCTAAAAGGGTCTCAAATGATTGCTTCAAGGCATGTTTTACGCCTAGTTTCCATTTTCCAGTACCTCTTGAGGTTGTATCTTATTTATCCTCTATCATCTGAAATCACCAAGGCAAGTGGGGTAATGATGGAAAAAGCATGGGCTGGGGCAGCATATAATCTGATGCTCTATATGCTGGCTAGTCACgttttaggATCCTCTTGGTACCTGTTATCTATTGAACGGCAGAACGAATGTTGGAAGAAAGCTTGCACCCTGCAGTATCCATACTGCCAGTATCATTATCTTGATTGTCAAAGCATGGGTGACCCTGATAGGATTGCTTGGTTAAGTTCAAGCAATCTCTCAGGTCTATGTGATCAGAACAGTGATTTCTTTCAATTTGGCATCTTTGCTGATGCTCTAAATTTGGAAATTACGGCCTCTAAATTCTTCAACAAATACTATTACTGTCTCTGGTGGGGACTAAGGAATCTAAGCTCTGTGGGACAGAATCTCTTAACAGGAACACGTGTTGCGGAGATCAATTTTGCCGTGGTCGTTGCAATTCTTGGATTGGTGCTTTTTGCACTGCTTATAGGCAATATGCAAACCTACCTGCAATCCACCACTACGCGGCTAGAAGAATGGAGAATAAGAAGGACAGATACTGAAAGATGGATGCATCACAGGCAGCTCCCTGGTTACCTGAAGCAAAATGTGAGACGCCACGAACAATTCAGATGGGTTGCTACTAGGGGAGTTGATGAGGAAACTATTCTCAGAGACCTTCCTACAGATCTAAGACGTGACATCAAACGCCACCTTTGCCTTAATCTAGTTCGACAAGTACCACTATTTGATCAAATGGATGAAAGGATGCTAGATGCAATATGTGAGAGGCTGAAACCTTCTCTTTTCACTCCAGGCGCTTGTGTGGTTCGCGAAGGCGACCTTGTGAATGAGATGGTTTTCATTGTCCGAGGCCGCCTAGATTCTTGCACCACCAATGGTGGCAGGACAGGTTTCTTCAACTCCTGCAGAATTGGCTCTGGTGACTTCTGTGGTGAAGAGCTCTTGCCATGGGCCTTGGACCCTCGTCCAACGGTTGTCCTTCCTTCGTCAACTCGCACGGTGAAAGCCATCACTGAAGTGGAAGCCTTTGCACTCATTGCAGGGGACTTGAAGTTTGTGGCAGCCCAATTCCGCAGGTTGCACAGCAAGCAACTGAGGCACACGTTCAGGTTCCACTCCCACCAGTGGAGGACTTGGGCTGCATGCTTCATACAAGCAGCATGGTTCAGGTACAAGAGAATGAAGGACACAAGTGAGCTGAAGAAAAAGGAGAATCTGATTATGGCCTATGTGCCTGGAACAGGCACTGAACATTTCTCTGCACCTCTGCAGGCCCCAGTGGGCACAATGTATGCTGCAAAACTAGCATCCAGCCCAAGGAAAGGCAGGAGCCTGAGATATGGGTCTGAACTTGACATTCTTGGTTCATTGAGGAAGCCCCTTGAACCAAACTTTACTGATGATGATGACAGTTGA	2121	0.4432	MGSDRSRSVRFQDELETNKLMDKGNKGSHLSMVAYEMSGKHKKVGKDAVGKSSDGRELSRVFSEDYDAAQILILDPRGSRVNTWNKIFLAACLISLFVDPLFFYLPVAKKDKCIDMSPGLEVSLTIIRTLIDAFYIIQIYFRFQTAYIAPSSRVSGRGELIIDSSKIASKYMRRDFWLDLVAAQPLPQVLIWAVIPNLKGSQMIASRHVLRLVSIFQYLLRLYLIYPLSSEITKASGVMMEKAWAGAAYNLMLYMLASHVLGSSWYLLSIERQNECWKKACTLQYPYCQYHYLDCQSMGDPDRIAWLSSSNLSGLCDQNSDFFQFGIFADALNLEITASKFFNKYYYCLWWGLRNLSSVGQNLLTGTRVAEINFAVVVAILGLVLFALLIGNMQTYLQSTTTRLEEWRIRRTDTERWMHHRQLPGYLKQNVRRHEQFRWVATRGVDEETILRDLPTDLRRDIKRHLCLNLVRQVPLFDQMDERMLDAICERLKPSLFTPGACVVREGDLVNEMVFIVRGRLDSCTTNGGRTGFFNSCRIGSGDFCGEELLPWALDPRPTVVLPSSTRTVKAITEVEAFALIAGDLKFVAAQFRRLHSKQLRHTFRFHSHQWRTWAACFIQAAWFRYKRMKDTSELKKKENLIMAYVPGTGTEHFSAPLQAPVGTMYAAKLASSPRKGRSLRYGSELDILGSLRKPLEPNFTDDDDS	706

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu7g2416	706	Pfam	Ion transport protein	83	403	IPR005821	GO:0005216\|GO:0006811\|GO:0016020\|GO:0055085
	Ssu7g2416	706	ProSiteProfiles	cAMP/cGMP binding motif profile.	476	561	IPR000595	-
	Ssu7g2416	706	PRINTS	EAG/ELK/ERG potassium channel family signature	389	398	IPR003938	GO:0005249\|GO:0006813\|GO:0016020
	Ssu7g2416	706	PRINTS	EAG/ELK/ERG potassium channel family signature	439	446	IPR003938	GO:0005249\|GO:0006813\|GO:0016020
	Ssu7g2416	706	PRINTS	EAG/ELK/ERG potassium channel family signature	345	362	IPR003938	GO:0005249\|GO:0006813\|GO:0016020
	Ssu7g2416	706	PRINTS	EAG/ELK/ERG potassium channel family signature	139	148	IPR003938	GO:0005249\|GO:0006813\|GO:0016020
	Ssu7g2416	706	PRINTS	EAG/ELK/ERG potassium channel family signature	371	382	IPR003938	GO:0005249\|GO:0006813\|GO:0016020
	Ssu7g2416	706	PRINTS	EAG/ELK/ERG potassium channel family signature	256	266	IPR003938	GO:0005249\|GO:0006813\|GO:0016020
	Ssu7g2416	706	Gene3D	-	90	400	-	-
	Ssu7g2416	706	CDD	CAP_ED	476	607	IPR000595	-
	Ssu7g2416	706	Gene3D	Jelly Rolls	474	594	IPR014710	-
	Ssu7g2416	706	Gene3D	Helix hairpin bin	402	467	-	-
	Ssu7g2416	706	SUPERFAMILY	Voltage-gated potassium channels	75	398	-	-
	Ssu7g2416	706	PANTHER	PROTEIN CNGC15A	9	702	-	-
	Ssu7g2416	706	SUPERFAMILY	cAMP-binding domain-like	405	596	IPR018490	-
	Ssu7g2416	706	PANTHER	CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED	9	702	-	-
	Ssu7g2416	706	SMART	cnmp_10	476	607	IPR000595	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu7g2416	Ssu-Chr7	47151951	47156776	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu7g2416	50	703	Ion Channels	AT2G28260	63.456	0.0	869

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu7g2416	K05391		-	gmx:100815543	1315.44

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Ssu7g2416	7	47151951	47156776	Ssu7g2416	7	47151951	47156776	ECH