Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2412 ATGATTACATTCATGGACTCAAAGGAGAAATCAAAGGAGGTGGAGAGGTGTTTGGATCCTCAGCTATGGCAAGCCTGTGCAGGTGGTATGGTGCAGATGCCAGCAGTAAACACTAAGGTCTATTACTTCCCTCAGGGCCATGCTGAGCATGCATGTGGACCAGTCAACTTCAGGGCTTGTCCTAAGGTTCCACCTTTGGTTCCATGCAGAGTGGCTGCTATCAATTACAGGGCTGATCCTGAGACTGACGAGGTCTATACCAAACTCAGGCTTGTTCCGCTGAATGCCAATGATGCTGATTCTGACCGTGATGTTGTTGTTGGGGCTGAAACTCAGGACAAGCCTACTTCATTTGCAAAAACCTTGACCCAATCTGATGCCAACAATGGTGGGGGGTTTTCTGTTCCTAGGTATTGTGCTGAGACAATTTTCCCTCGTCTGGACTATTCGGCCGACCCTCCTGTTCAGAACATCCTTGCCAAAGATGTTCATGGGGAAACATGGAAATTCAGACACATCTATAGGGGCACGCCGAGGCGGCATCTGTTGACTACCGGGTGGAGTACTTTTGTGAATCACAAGAAGCTTGTTGCTGGGGACTCAATTGTGTTTTTGAGGGCGGAAAATGGGGATCTGTGTGTTGGAATCCGGCGAGCGAAGAAAGGGATTGGTGGTGGACCTGAGGCTTCCTTAGGGTGGAACCCTGCAGGAGGAAATTGTCCTGTGCCCTATGGTGGATTTTCGCCGTTTTTGAGGGAGGATGATAATAGAATCCTGAGAAATGGTAACAGCAATGGGTTGAACCCAAGTGTGAGTATGATGGGCAGGGGAAAAGTGAGGCCGGAAGCTGTTATTGAAGCTGCAAATCTTGCAGCCAATAAGCAACCCTTTGAGGTTGTTTACTACCCTCGGGCAAGTACTCCAGAGTTTTGTGTGAAGGCCTCACTAGTTGAAGCAACACTGCAGATTAGGTGGTGTTCTGGAATAAGGTTCAAGATGGCCTTTGAAACAGAGGATTCCTCGCGGATAAGTTGGTTTATGGGAACGATATCTTCGGTTCAGGTTGCTGATCCCCTTAACTGGCCTAACTCACCTTGGAGGCTTCTCCAGGTTACATGGGATGAACCAGATTTACTTCAAAACGTGAGAAGGGTAAGCCCATGGCTGGTTGAATTGGTGTCAAACATGCCTGCCATCCATCTTTCCCCCTTCTCGCCACCACGGAAGAAATTGAGATTGCCTCAACACCCAGATTTCCCCCTTGATGGCCAGATTCCTTTGCCAACATTTCCCGGCAACCTTCTAGGTCCCAGCAACACCAACCAGTTTGGTTGTTTACCCGAAAGTACTCCTGCTGGCATGCAGGGAGCCAGGCATGCTCACTATGGTCTATCCTTATCAGATCTCCACCTCAATAAACTGCAGTCAGGTCTATTTCCGGCTGGTTTCCCACCTCTTGATCACGCTGCTACACCAATGAGGGTCTCGAATAACCTAACATTGCAAAAGCCCAGCATGAGTGAGAACGTCTCTTGCTTACCATCTATGGCAAATTCTACTCAGTCTTCAAAGAAATTGGATGATGGGAAGACACCCCAGCTTGTGCTTTTCGGCCAAAAAATTCTCACCGAGCAGCAGATCTCTCTGAGCAGCTCTGGTGACACATTCTCCCCAGTTCTTGCCAGAAATTGTTCGTCAGATGGAAATGCCGATAAAGTGACTAACTTTTCCGGTGGTTCTGGATCAGCTCTTCATCAGCAAGGCCTACACGAGCGCTCCTCTTGTGAGAGGTTCCAGTGGTATAGGGATAACTACCAAGAAACTGAGGCCGGTTTGGAGACTGGTCACTGTAAAGTTTTTATGGAATCAGAAGATGTAGGTCGGACTGTGGACCTCTCATTGCTTCGGTCTTATGATGAACTATACAGAAAGCTGGCAGACATGTTTGGCATTGAAAAATCTGAGATGTTAAGTCAGGTGCTCTACCGTGATATAAATGGGACAGTCAAACACATTGGTGATGAACCATTCAGGTAG 2037 0.4801 MITFMDSKEKSKEVERCLDPQLWQACAGGMVQMPAVNTKVYYFPQGHAEHACGPVNFRACPKVPPLVPCRVAAINYRADPETDEVYTKLRLVPLNANDADSDRDVVVGAETQDKPTSFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSADPPVQNILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFLRAENGDLCVGIRRAKKGIGGGPEASLGWNPAGGNCPVPYGGFSPFLREDDNRILRNGNSNGLNPSVSMMGRGKVRPEAVIEAANLAANKQPFEVVYYPRASTPEFCVKASLVEATLQIRWCSGIRFKMAFETEDSSRISWFMGTISSVQVADPLNWPNSPWRLLQVTWDEPDLLQNVRRVSPWLVELVSNMPAIHLSPFSPPRKKLRLPQHPDFPLDGQIPLPTFPGNLLGPSNTNQFGCLPESTPAGMQGARHAHYGLSLSDLHLNKLQSGLFPAGFPPLDHAATPMRVSNNLTLQKPSMSENVSCLPSMANSTQSSKKLDDGKTPQLVLFGQKILTEQQISLSSSGDTFSPVLARNCSSDGNADKVTNFSGGSGSALHQQGLHERSSCERFQWYRDNYQETEAGLETGHCKVFMESEDVGRTVDLSLLRSYDELYRKLADMFGIEKSEMLSQVLYRDINGTVKHIGDEPFR 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2412 678 Gene3D - 612 678 - -
Ssu7g2412 678 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 6 677 IPR044835 GO:0003677|GO:0006355|GO:0009725
Ssu7g2412 678 CDD B3_DNA 117 218 IPR003340 GO:0003677
Ssu7g2412 678 Pfam B3 DNA binding domain 118 219 IPR003340 GO:0003677
Ssu7g2412 678 PANTHER AUXIN RESPONSE FACTOR 6 677 - -
Ssu7g2412 678 ProSiteProfiles PB1 domain profile. 614 678 IPR000270 GO:0005515
Ssu7g2412 678 SMART B3_2 118 220 IPR003340 GO:0003677
Ssu7g2412 678 Gene3D - 324 398 - -
Ssu7g2412 678 ProSiteProfiles B3 DNA-binding domain profile. 118 220 IPR003340 GO:0003677
Ssu7g2412 678 Gene3D - 116 220 IPR015300 -
Ssu7g2412 678 SUPERFAMILY DNA-binding pseudobarrel domain 111 220 IPR015300 -
Ssu7g2412 678 Pfam Auxin response factor 287 370 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2412 Ssu-Chr7 47054832 47057363 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2412 14 677 B3 DNA Binding Superfamily AT4G30080 57.670 0.0 714
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Ssu7g2412 B3 3.5e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2412 - - gmx:100796522 1250.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g2412 7 47054832 47057363 Ssu7g1072 7 23600361 23602896 ECH
Ssu7g2412 7 47054832 47057363 Ssu7g2412 7 47054832 47057363 ECH
Ssu7g2412 7 47054832 47057363 Ssu8g0576 8 9273743 9276576 ECH
Ssu7g2412 7 47054832 47057363 Ssu3g2491 3 77250703 77253688 ECH