Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2405 ATGCCACCGAAGTTCGATCCCTCGCAGGTGGTGGACGTGTACGTCCGAGTCACCGGCGGCGAGGTGGGCGCGGCGAGTTCCCTCGCCCCGAAGATCGGGCCGCTGGGGCTGTCTCCGAAGAAGATCGGCGAGGACATCGCCAAGGAGACGGCGAAGGACTGGAAGGGCCTCCGCGTGACGGTGAAGCTCACCGTGCAGAACCGGCAGGCAAAGGTGACGGTGGTGCCCTCCGCCGCCGCGCTGGTCATCAAGGCCCTGAAGGAGCCCGAGAGGGACAGGAAAAAGACGAAGAACATCAAGCACAATGGGAGCATTGCCTTAGACGACGTCGTTGAGATCGCGAGGGTGATGAGGCCGCGATCCATGGCGAAGGATCTCGGCGGAACCGTGAAGGAAATTCTCGGGACTTGCGTGTCGGTCGGGTGCACGGTCGAAGGGAAGGACCCCAAGGATCTGCAGCAGGAGATTGCCGATGGAGACGTTGAGGTTCCTCTCGATTGA 501 0.6248 MPPKFDPSQVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKTKNIKHNGSIALDDVVEIARVMRPRSMAKDLGGTVKEILGTCVSVGCTVEGKDPKDLQQEIADGDVEVPLD 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2405 166 PANTHER 60S RIBOSOMAL PROTEIN L12-3-LIKE 1 166 - -
Ssu7g2405 166 SUPERFAMILY Ribosomal protein L11, C-terminal domain 76 149 IPR036769 -
Ssu7g2405 166 Hamap 50S ribosomal protein L11 [rplK]. 9 146 IPR000911 GO:0003735|GO:0005840|GO:0006412
Ssu7g2405 166 Pfam Ribosomal protein L11, N-terminal domain 13 69 IPR020784 -
Ssu7g2405 166 Gene3D - 1 81 IPR036796 -
Ssu7g2405 166 ProSitePatterns Ribosomal protein L11 signature. 131 146 IPR020785 GO:0003735|GO:0005840|GO:0006412
Ssu7g2405 166 SMART rl11c 13 145 IPR000911 GO:0003735|GO:0005840|GO:0006412
Ssu7g2405 166 Pfam Ribosomal protein L11, RNA binding domain 75 144 IPR020783 GO:0003735|GO:0005840|GO:0006412
Ssu7g2405 166 Gene3D - 82 164 IPR036769 -
Ssu7g2405 166 CDD Ribosomal_L11 13 144 IPR000911 GO:0003735|GO:0005840|GO:0006412
Ssu7g2405 166 PANTHER 60S RIBOSOMAL PROTEIN L12 1 166 IPR000911 GO:0003735|GO:0005840|GO:0006412
Ssu7g2405 166 SUPERFAMILY Ribosomal L11/L12e N-terminal domain 1 87 IPR036796 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2405 Ssu-Chr7 46952668 46953168 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2405 1 164 Cytoplasmic Ribosomal Protein Gene Family AT2G37190 88.415 2.94e-106 299
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2405 K02870 - egt:105961229 318.161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g2405 7 46952668 46953168 Ssu7g2405 7 46952668 46953168 ECH
Ssu7g2405 7 46952668 46953168 Ssu3g2499 3 77400241 77400741 ECH