Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2401 atGCAAACCCTCTCCcactctctcctctttcttctccTCCTGTTCCTGTTCCTCCACGACTCTGCACACGGGTTCGGCGCCATGGGACCAATCTCCGCGTCGTTCGGAAGCGACGAGGTTTTCTGCGCCATCGACGCCAGCGGCAAGCAAGACGTGATATGCTGGGGGAACAACGCCACGTCGGCAAATCTTCCCTCCGTCACCGACGCCGTCCCCGCCATGTCAGCACTCTCCGGCGGGGAGGGCTTCCTCTGCGGCATTTTGGCGAACACCTCGCAAGCCTATTGCTGGGGCGCCATCGCGAGACCGAGCGCGGATCTCGTTCTCGTGCCCCCGGCGTACCGGAACACCGCTTATTCCAGCATCGCCGCCGGCAAGAGCCACGTGTGCGCCGTCCGAGGATCCTACTACGCCGATCGCGATTCCGGCGCCGTGGATTGCTGGGAAATAGCGAAAACCGCCAACAACACGTTGTCGGCGAAGCAGAGCGACCTCTTCTTCGACCAATCCGTGGTGAATCTGGAGCTGAAGACGGTTGTTTCCGGCGAGGGGTTCTCCTGCGGCGAGGTCCACGACGGTGGACTCGTGTGCTGGGGACCCGCTTCGGGGGGGATAAGAGTTTCCAACGTTTCCGAGAGTTTCGTGGTTTTGGCGGCGGGCCGGAGCTCCGTTTGCGGCGTTTTCAACTTTTCCGGGGAGTTAAAATGCTGGGGCGACCCTGCTTCGTTTTCGGATCCTCCGAGGGGCGAGGTTCGGTTGGTGTCTCTATCAGCAGGGGCTAACCACTTCTGCGGCGTTAGAATGGATAACCACGAAGTTGAATGTTGGGGTGATTTGAATTCCTCGGTGGTTCCACGAGGTTATGGTTTCATGGCTATTGCTTCTTCGGATTTCACCACGTGCGGGATCAGGGAGGACGATCTTCTTCTGGATTGTTGGCTCGTGAATGCTTCAAAGCCTGATTTTAACCCTCCGTTGGAGCTCTCGAGTCCTGGTTTGTGCAGGGCTAGTTCTTGCGGGGTTGGGGAGTTTGCTTTTAACGTGAGTGTGTTGAATGAGCCAGATTTGACGAGCCTCTGTGTTAGGGAGGGTTTGAGGATTTGTTCGCCTTGTGGGTCGAATTGTTCTCAGGGGTTCTTTTTGTCTAGTGAGTGTACTAAAAACGCGGATAGAGTTTGCACCGCGTGTTCTCTGTGTCAGAACAGTTCTTGTTTTGGTGTTTGTGGACTTCACTCGTCAACGGGGCTGCATGTGCGCTGGCACAAAATACCTAGATGGGTGGTTATAGTTGGGTCTTCGGTGCTGGggtttttggttattttgctTTGTGGGTGTCTTTTTATGGTTAGGAAGAGGACAAAGAAGCAATCCAAGTCTTGCATGGGGAAACCGGAGCAGGAGGATGATCATGTCAATGTTGCTATTAACTCTACTCCTTCTGTTGGGTCTTGTCCCGGGGCGCCTCAGGTTTTCAGGCTTTCTGAGTTGAAGGATGCTACTAATGGGTTTAAGGAGTTTAATGAACTTGGAAGAGGGAGTTATGGGTTTGTGTACAAGGCTTTGTTGTCTGATGGGAGAGTGGTTGCTGTGAAAAGAGCGAATGCTGCTACTATTATTCACACCAATAACCGTGATTTTGAAATGGAATTAGAGATTCTCTGCAAAATTCGTCATtgtaatattgttaatttgttgGGGTATTGCGCGGAGATGGGGGAGAGGTTGCTTGTTTACGAGTATATGCCTCATGGGACGCTTTATGATCACCTCCATGGTGGTCTTTCCCCGCTTAATTGGAACCTCAGGCTGAAGATAGCGATGCAGGCCGCAAAGGGGCTTGAGTACCTTCACAAGGAACTGGTGCCTCCGATTGTGCACAAGGATCTCAAGAGTTCGAACATTCTTTTGGATTCGGAGTGGGGGGCAAGAATTTCAGACTTTGGACTACTTGCTTCGAGTGACAAAGAGCTCAATGGGGACCTAGAAAGCGATGTTTACAATTTTGGGATTGTGTTGTTAGAGATTCTGAGTGGAAGGAAGGCTTATGATAGGGATTATACTCCACCGAACTTGGTTCAGTGGGCAGTGCCTTTGATCAAACAAGGGAAGGCAGCTGCCGTAATTGATAGGTACGTGGCTCTTCCAAGAAATGTTGAACCTTTGCTTAAGCTTGCCGATATAGCAGAGCTTGCTCTGAGAGAGAATCCAAGTGAGCGTCCACCTATGTCGGATATAGCATCTTGGTTGGAGCAAATTGTGAAGGACGGATTGATCTTATAG 2280 0.507 MQTLSHSLLFLLLLFLFLHDSAHGFGAMGPISASFGSDEVFCAIDASGKQDVICWGNNATSANLPSVTDAVPAMSALSGGEGFLCGILANTSQAYCWGAIARPSADLVLVPPAYRNTAYSSIAAGKSHVCAVRGSYYADRDSGAVDCWEIAKTANNTLSAKQSDLFFDQSVVNLELKTVVSGEGFSCGEVHDGGLVCWGPASGGIRVSNVSESFVVLAAGRSSVCGVFNFSGELKCWGDPASFSDPPRGEVRLVSLSAGANHFCGVRMDNHEVECWGDLNSSVVPRGYGFMAIASSDFTTCGIREDDLLLDCWLVNASKPDFNPPLELSSPGLCRASSCGVGEFAFNVSVLNEPDLTSLCVREGLRICSPCGSNCSQGFFLSSECTKNADRVCTACSLCQNSSCFGVCGLHSSTGLHVRWHKIPRWVVIVGSSVLGFLVILLCGCLFMVRKRTKKQSKSCMGKPEQEDDHVNVAINSTPSVGSCPGAPQVFRLSELKDATNGFKEFNELGRGSYGFVYKALLSDGRVVAVKRANAATIIHTNNRDFEMELEILCKIRHCNIVNLLGYCAEMGERLLVYEYMPHGTLYDHLHGGLSPLNWNLRLKIAMQAAKGLEYLHKELVPPIVHKDLKSSNILLDSEWGARISDFGLLASSDKELNGDLESDVYNFGIVLLEILSGRKAYDRDYTPPNLVQWAVPLIKQGKAAAVIDRYVALPRNVEPLLKLADIAELALRENPSERPPMSDIASWLEQIVKDGLIL 759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2401 759 Gene3D Phosphorylase Kinase; domain 1 469 580 - -
Ssu7g2401 759 Gene3D - 164 330 IPR009091 -
Ssu7g2401 759 Gene3D Transferase(Phosphotransferase) domain 1 581 658 - -
Ssu7g2401 759 Gene3D Transferase(Phosphotransferase) domain 1 659 756 - -
Ssu7g2401 759 ProSiteProfiles Protein kinase domain profile. 503 749 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu7g2401 759 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR1 28 757 - -
Ssu7g2401 759 Pfam Protein tyrosine and serine/threonine kinase 507 653 IPR001245 GO:0004672|GO:0006468
Ssu7g2401 759 ProSitePatterns Protein kinases ATP-binding region signature. 509 531 IPR017441 GO:0005524
Ssu7g2401 759 SUPERFAMILY RCC1/BLIP-II 31 280 IPR009091 -
Ssu7g2401 759 ProSiteProfiles TNFR/NGFR family cysteine-rich region domain profile. 338 393 IPR001368 GO:0005515
Ssu7g2401 759 SUPERFAMILY Protein kinase-like (PK-like) 480 750 IPR011009 -
Ssu7g2401 759 Gene3D - 30 163 IPR009091 -
Ssu7g2401 759 ProSitePatterns Serine/Threonine protein kinases active-site signature. 624 636 IPR008271 GO:0004672|GO:0006468
Ssu7g2401 759 SMART serkin_6 503 749 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu7g2401 759 PANTHER OS01G0750732 PROTEIN 28 757 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2401 Ssu-Chr7 46922899 46925178 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2401 8 751 Receptor kinase-like Gene Family AT3G59420 31.599 1.27e-113 363
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Ssu7g2401 PK_Tyr_Ser-Thr 1.9e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2401 - - gmx:100802259 1364.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g2401 7 46922899 46925178 Ssu7g2401 7 46922899 46925178 ECH