Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2400 ATGAAAATTCCTTGTTCTTTTTTCGCTTGTTTCTCTTCATCGGCCAAagaacaaaacaacaacaacgACTGCCCGGAGGGAGAGAACGATGGGAGCTTTCGTTTGTTCACTTACAGCCAATTGAAATTAGCCACTCGCAATTTTCATTCCTCGGAAAAGGTTGGAGAAGGCGGCTTTGGCTTTGTCTATAAGGGGAGGATTAGTGATGGCTCTTTTGTGGCGGTGAAAGTGCTTTCGGTTGAGGTGGAATCCATGCGAGGGGAAAGGGAATTTGTGGCAGAATTGGCTACACTTGCAAACATCAGGCACCAAAATCTTGTAAGCCTCAGAGGGTGCTGCGTGGAAGGAGTTCACAGATATTTAGTCTACGATTATATGGAGAATAACAGCCTCTACAACACTTTCTTAGGTTCGGAGGAGGGAAGGACGAGATTCATCTGGGAAACAAGGAGGGACATATCTATAGGCGTGGCTCGTGGGCTTGTCTTTCTCCATGAGGAGCTCAACCCTCATATCGTACATAGAGACATCAAAGCCAAAAATATACTTCTTGATCGGAATTTCACACCAAAGGTTTCAGATTTTGGTTTGGCAAAATTGCTGAGAGACGAAGCATCTTACATCAGCACCCGGGTTGCGGGGACATTGGGTTATTTAGCTCCAGAGTATGCCAATTCTGGACAGGTTTCGCGAAAATCAGATGTTTATAGCTTTGGAGTGTTACTTTTACAAATTGTCAGTGGCTTAGCAGTGGTGGATGCCTATCAAGATATTGAACGTTTCATCGTGGAGAAGGCGTGGGCAGCGTATCaagataatgatttattaaaattggtgGATCCAATGCTCAATATGGATTTTCCCGAGGAAGAGGCCTTAAAATTCCTCAAGGTGGGGCTGCTTTGCGTGCAAGAAACCGCCAAGCTTCGGCCACGAATGACAGAGGTTGTAGAGAAGTTGACCAACAGCGTTGATATGAGAGACGTTCACATTTCAAAACCAGGGTTCGTTGCTGATCTCAGGAACATCAGAATCAAGCAACAAAACTCGTCCCAGGAAGCAAGTTCTGCTGGAGCAACCTTTGCAAGCTCCATTTGGAGTTCGGTCAATCTCGCTCGTTAA 1122 0.4412 MKIPCSFFACFSSSAKEQNNNNDCPEGENDGSFRLFTYSQLKLATRNFHSSEKVGEGGFGFVYKGRISDGSFVAVKVLSVEVESMRGEREFVAELATLANIRHQNLVSLRGCCVEGVHRYLVYDYMENNSLYNTFLGSEEGRTRFIWETRRDISIGVARGLVFLHEELNPHIVHRDIKAKNILLDRNFTPKVSDFGLAKLLRDEASYISTRVAGTLGYLAPEYANSGQVSRKSDVYSFGVLLLQIVSGLAVVDAYQDIERFIVEKAWAAYQDNDLLKLVDPMLNMDFPEEEALKFLKVGLLCVQETAKLRPRMTEVVEKLTNSVDMRDVHISKPGFVADLRNIRIKQQNSSQEASSAGATFASSIWSSVNLAR 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2400 373 SUPERFAMILY Protein kinase-like (PK-like) 25 320 IPR011009 -
Ssu7g2400 373 ProSitePatterns Serine/Threonine protein kinases active-site signature. 172 184 IPR008271 GO:0004672|GO:0006468
Ssu7g2400 373 ProSitePatterns Protein kinases ATP-binding region signature. 54 76 IPR017441 GO:0005524
Ssu7g2400 373 SMART serkin_6 48 296 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu7g2400 373 Gene3D Phosphorylase Kinase; domain 1 9 125 - -
Ssu7g2400 373 Pfam Protein kinase domain 48 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu7g2400 373 Gene3D Transferase(Phosphotransferase) domain 1 126 333 - -
Ssu7g2400 373 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 10 347 - -
Ssu7g2400 373 PANTHER RECEPTOR-LIKE KINASE 10 347 - -
Ssu7g2400 373 CDD STKc_IRAK 54 322 - -
Ssu7g2400 373 ProSiteProfiles Protein kinase domain profile. 48 301 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2400 Ssu-Chr7 46863301 46865060 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2400 36 364 Receptor kinase-like Gene Family AT1G07650 45.783 2.07e-90 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Ssu7g2400 Pkinase 6e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2400 - - gmx:100813945 637.106
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g2400 7 46863301 46865060 Ssu7g2400 7 46863301 46865060 ECH