Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2399 atgGGTAACAGAGGAAGCAGCGGCTCCAACAGCCGTCGGAGACCCGGCGGCAGCGGCAGCGGGAGGCGGATTCACCCGCCGCCTCCGCCGCCGCCGGAGATCACGGCGAACCGATTCGTGTACCCTCCCGCCGCCACGCCGTATCACAACTACCCCGGCTACTATCCGCCGCCAACAACGATGGCTGCGCCGTTGCCGGCGCCGTAcgaccaccaccaccgccaggCGGTGGACCCGATGTGGGGGCGGTGCCCGCCGGCGGCGGCACCGGCGCCTTATGTGGAGCACCAGAAGGCGGTTACTATAAAGAACGATGTCAACATCAAGAAGGAGACACTTAGGATTGAGCCTGATGATGAAAACTCTGGCCGTTTCCTCGTGTCGTTTACGTTTGATGCCACCATTTCGGGGAGCATAACCATTCTTTTCTTTGCAAAAGAAGGGGAAGGTTGCATCCTAACCCCAATGAAGGAAAATGTTCTTCCACCCGTAACTGTAAATTTCCAGCAAGGTCTTGGCCAGAAGTTTAAACAGCCAGCTGGTACTGGGattgatttttcaatatttgaggAGTCTGAGTTATTGAATGTGGGGGACATGGATGTCTATCCTGTCGCAATTAAAGCAGATGCATCCTCTGGCGACCATGATGGATCAAATGAAACTCCAACAACTGGCAACACAAACTCTCAGATAACTCAAGCAGTGTTCGAGAAGGAGAAAGGAGAGTTCCAAGTGAAGGTTGTTAAACAGATCTTATGGATAAATGGAATGAGGTATGAACTGCAGGAGATATATGGTATTGGAAATTCAGTGGAGAGTGACTTGGACGGGAATGACCCAGGAAAAGAGTGCGTTATATGCTTGTCAGAGCCTCGAGACACAACTGTCCTTCCATGTCGCCACATGTGTATGTGTAGCGGCTGTGCAAAGGTTTTGAGGTTCCAGACAAATAGATGTCCAATCTGCAGACAACCAGTTGAGAGGCTTTTGGAGATCAAAGTTGGGCCTGAGCCTGAGGAGTGA 1026 0.501 MGNRGSSGSNSRRRPGGSGSGRRIHPPPPPPPEITANRFVYPPAATPYHNYPGYYPPPTTMAAPLPAPYDHHHRQAVDPMWGRCPPAAAPAPYVEHQKAVTIKNDVNIKKETLRIEPDDENSGRFLVSFTFDATISGSITILFFAKEGEGCILTPMKENVLPPVTVNFQQGLGQKFKQPAGTGIDFSIFEESELLNVGDMDVYPVAIKADASSGDHDGSNETPTTGNTNSQITQAVFEKEKGEFQVKVVKQILWINGMRYELQEIYGIGNSVESDLDGNDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIKVGPEPEE 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2399 341 Pfam Zinc finger, C3HC4 type (RING finger) 283 329 - -
Ssu7g2399 341 MobiDBLite consensus disorder prediction 22 37 - -
Ssu7g2399 341 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 269 334 IPR013083 -
Ssu7g2399 341 PANTHER MAHOGUNIN 1 341 IPR045194 GO:0061630
Ssu7g2399 341 ProSiteProfiles Zinc finger RING-type profile. 285 324 IPR001841 -
Ssu7g2399 341 PANTHER E3 UBIQUITIN-PROTEIN LIGASE 1 341 - -
Ssu7g2399 341 MobiDBLite consensus disorder prediction 1 16 - -
Ssu7g2399 341 SMART ring_2 285 323 IPR001841 -
Ssu7g2399 341 MobiDBLite consensus disorder prediction 1 38 - -
Ssu7g2399 341 SUPERFAMILY RING/U-box 284 330 - -
Ssu7g2399 341 CDD mRING-HC-C3HC5_MGRN1_like---blasttree 284 324 IPR045195 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2399 Ssu-Chr7 46803075 46806699 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2399 88 304 C3H Transcription Factor Family AT3G09770 66.071 6.18e-102 301
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2399 - - gmx:100789032 575.474
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g2399 7 46803075 46806699 Ssu7g2399 7 46803075 46806699 ECH