Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2395 ATGGTTTATACAGCAACAGTTGAGAAAGACCTGAAATTACCAATTCATCGTTCCCATTCAGTACCCGTGCTTAACAAAGAAGGTAACTCACCTGTTCGTGGCATGTTTCGTATAGTTCCGACCACACCACGATTGGATGAGAAAATTGCCACAACACCTATAACATCTCCGATTCATGATACtgTTGAAAATGAGCATGGTGGTGAGGATATTCCCGAAGAAGAAGCTGTTTGTAGAATTTGTATGGTTGAACTGGGAGAAGGTGCTGATACTTTTAAATTGGAGTGTAGCTGCAAAGGTGAGCTTTCATTGGCACACAAAGAATGTGCAGTCAAATGGTTTACCATTAAAGGTAATAGAACATGTGATGTGTGCAAGCAAGAAGTTCAGAACCTACCTGTCACTCTTTTACGAGTTCAAAATGGTCAGAACATGCTAGGGGGCAGAGGTCAGCAAGCTGAGGGTTCTCAATACAGGGTTTGGCAGGATGCTCCCATTCTTGTTGTTATCAACATGCTGGCTTACTTTTGCTTTCTTGAGCAGCTTCTTGTGTCTAGTATGGGATCTGGTGCTATTGCCATGTCTCTCCCATTTTCTTGTATATTGGGTCTTCTTGCAAGCATGACAGCTACTACAATGGTGAGGAGAAATCATGTTTGGGTTTATGCAACTGTTCAGTTTTGTCTGGTGGTTCTTGCTGGACATCTTTTCTTCTCATTGGCTCATATGCAAGCTGTTGTAGCTATCCTATTAGCTACATTTACTGGGTTTGGAGTTGTAATGTGTGGAACTTCTATTCTTATGGAGATTTTGAAGTGGAGGAGAAGATCACTAGCTCAGTCGAATCAACAGCATGGTTCGCAAGAGGCAGTACCACCTGATCAATCATCTACAGTTGCTCATCAAGCTCAGATTGGTTCTGAACAAACCGAAAGCAATTTGGGAGAGCCTCCTGTGCAGAGTTGA 966 0.4244 MVYTATVEKDLKLPIHRSHSVPVLNKEGNSPVRGMFRIVPTTPRLDEKIATTPITSPIHDTVENEHGGEDIPEEEAVCRICMVELGEGADTFKLECSCKGELSLAHKECAVKWFTIKGNRTCDVCKQEVQNLPVTLLRVQNGQNMLGGRGQQAEGSQYRVWQDAPILVVINMLAYFCFLEQLLVSSMGSGAIAMSLPFSCILGLLASMTATTMVRRNHVWVYATVQFCLVVLAGHLFFSLAHMQAVVAILLATFTGFGVVMCGTSILMEILKWRRRSLAQSNQQHGSQEAVPPDQSSTVAHQAQIGSEQTESNLGEPPVQS 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2395 321 Pfam RING-variant domain 78 125 IPR011016 GO:0008270
Ssu7g2395 321 PANTHER OS02G0165000 PROTEIN 5 311 - -
Ssu7g2395 321 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 64 134 IPR013083 -
Ssu7g2395 321 SUPERFAMILY RING/U-box 74 129 - -
Ssu7g2395 321 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 5 311 - -
Ssu7g2395 321 ProSiteProfiles Zinc finger RING-CH-type profile. 70 132 IPR011016 GO:0008270
Ssu7g2395 321 CDD RING_CH-C4HC3_MARCH 78 126 - -
Ssu7g2395 321 SMART ringv_2 77 126 IPR011016 GO:0008270
Ssu7g2395 321 MobiDBLite consensus disorder prediction 281 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2395 Ssu-Chr7 46768980 46772821 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2395 72 178 C3H Transcription Factor Family AT2G37950 34.188 3.54e-12 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2395 - - gmx:100787963 565.459