Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2392 ATGCAAATGATGCCCCGTGACCCCTTTTCCCTATCCACTTCCATCGGAGCCTTCACTCAAGAGCAAAACACAAACCCTAACCCTAAACCTAACCACCCTCCCAAGAAGAAGAGAAACCTTCCAGGAACACCagATCCAGATGCCGAGGTCATTGCTCTCTCCCCGAAGACCCTCATGGCCACGAACCGATTCATTTGCGAAATATGCAACAAAGGGTTCCAGAGAGACCAAAACCTTCAGCTTCACCGAAGGGGTCACAACCTTCCGTGGAAACTACGACAAAGGTCCAACAAAGAGGTAAGGAAGAAGGTTTATATCTGCCCTGAACAAACCTGCGTCCACCACGACCCAGCAAGGGCACTCGGCGACCTCACTGGCATCAAAAAGCACTTCAGCAGAAAGCACGGCGAGAAGAAGTGGAAGTGTGACAAGTGCTCCAAGAAATACGCAGTCCAATCAGATTGGAAAGCCCACACCAAAACCTGTGGCACTAGAGAATACAAATGCGACTGTGGCACCCTCTTCTCcagGAAGGACAGCTTCATTACCCACAGAGCATTTTGCGATGCCTTGGCTGAAGAGAGTGCGAGGCTCACCTCAGTTACCACAACAAATCTAAATTTCAAGAATGAAGAGGGTACTATTAATGTGATGAACTCGCAGCATGGTTTGGGGCATGGACTAATTTCAGCACAGGGGCTTCAAAACGTAGGTGGCATTCCGCAATTCGGTTCACATGGGTTTCGTTTGGATTTTAATGGAATGGAACAACAAAGGCCAAGCTTGTCACTATGGTTGAACCAGGGGAATCCCcagatgaataataataatattaataacaacaataatgcTCCCGATGTGGGACCCAATTACATGTCCTCATGCTCTTCTTCAGGTTTGCCTGAGATTGTGCAAATGGCTCAGGCCAATGTCCTGATGGTGTCTAATTTTGGAGTGCCTGCGGGTTCTAATTCAACTAGTGCAAACCTTTCTCTGTCGTCACTACCTATTGGGAAAAGAGAAGCTGGTGGAACAGTAGTGGACTTGGCGTCTATATATTCTGAGGGTCAAAACAAGCAATCAAAGCCCGCTTCACCCATGTCAGCCACTGCGCTTCTGCAGAAAGCAGCGCAGATGGGTTCCACCAGAAGCACCAACCCTTCTATTTTCAGTGGTAGTTTTGGGGTGATGAACTCACCTTCCTCGCAAACTACCAgtctcaataataataacaacaacggCAGTGCAGCCATGATGCTGGGAAGTGCTAcgactactactactactactgccACTGACTATAGCTCATTGACGCATTCATCAAATAGTTTTGACCAACTTGTGATGCAAACCAATGTGCAGGTTGCAATGTGA 1374 0.4512 MQMMPRDPFSLSTSIGAFTQEQNTNPNPKPNHPPKKKRNLPGTPDPDAEVIALSPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRSNKEVRKKVYICPEQTCVHHDPARALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSDWKAHTKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESARLTSVTTTNLNFKNEEGTINVMNSQHGLGHGLISAQGLQNVGGIPQFGSHGFRLDFNGMEQQRPSLSLWLNQGNPQMNNNNINNNNNAPDVGPNYMSSCSSSGLPEIVQMAQANVLMVSNFGVPAGSNSTSANLSLSSLPIGKREAGGTVVDLASIYSEGQNKQSKPASPMSATALLQKAAQMGSTRSTNPSIFSGSFGVMNSPSSQTTSLNNNNNNGSAAMMLGSATTTTTTTATDYSSLTHSSNSFDQLVMQTNVQVAM 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2392 457 SMART c2h2final6 64 86 IPR013087 -
Ssu7g2392 457 SMART c2h2final6 140 160 IPR013087 -
Ssu7g2392 457 SMART c2h2final6 105 135 IPR013087 -
Ssu7g2392 457 Gene3D Classic Zinc Finger 119 197 - -
Ssu7g2392 457 PANTHER ZINC FINGER PROTEIN JACKDAW 7 453 IPR033243 GO:0003700
Ssu7g2392 457 MobiDBLite consensus disorder prediction 1 47 - -
Ssu7g2392 457 MobiDBLite consensus disorder prediction 1 26 - -
Ssu7g2392 457 ProSitePatterns Zinc finger C2H2 type domain signature. 66 86 IPR013087 -
Ssu7g2392 457 ProSiteProfiles Zinc finger C2H2 type domain profile. 64 86 IPR013087 -
Ssu7g2392 457 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 7 453 - -
Ssu7g2392 457 SUPERFAMILY beta-beta-alpha zinc fingers 63 160 IPR036236 -
Ssu7g2392 457 Pfam Zinc-finger double-stranded RNA-binding 64 86 IPR022755 -
Ssu7g2392 457 Gene3D Classic Zinc Finger 42 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2392 Ssu-Chr7 46703720 46705436 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2392 1 258 IDZ Gene Family AT5G03150 63.732 2.95e-124 369
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ssu7g2392 zf-C2H2_jaz 6.6e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2392 K25870 - gmx:100801182 682.174
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g2392 7 46703720 46705436 Ssu7g2392 7 46703720 46705436 ECH