Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2390 ATGGTTTCCCAAAACCCAGCGCAGGAAGAAAACTCAAAGCGGCATTGGTCCCTCCAAGACTTCGAGATCGGTAAGCCTCTCGGTAGGGGCAAATTTGGCAGAGTTTACGTCGCCAGAGAAGTCAAGaGCAAATTTGTTGTGGCATTAAAGGTTATATTCAAGGAACAAATTGAAAAGTACAATATTCATCACCAACTGAAGAGAGAGATGGGGATACAGACCAGTCTTCGGCACCCCAACATTCTGCGTCTTTATGGTTGGTTTCATGATGCTGACCGTGTTTTCTTGATTCTTGAGTATGCTTACAATGGAGAGCTCTACAAGGAGCTGAGAAAAAAAGGTCATCTCACTGAAAAGCAAGCTGCCACGTATATTTTGAGCCTCACAAGGGCGTTGGCTTATTGTCATGAGAAGCATGTTATTCATAGGGATATCAAGCCCGAAAATTTGTTACTTGACCATGAGGGTCGTCTTAAAATTGCGGACTTTGGTTGGTCTGTTCAGTCTAGAAGAAAAAGACATACCATGTGTGGAACATTGGATTATTTGGCACCAGAAATGGTTGAAAACAAAGCTCATGACTATGCAGTTGATAACTGGACTCTGGGTATCCTTTGTTATGAGTTCCTCTATGGTGCTCCTCCATTTGAGGCTGAGGGTCAAGCTGATACCTTCAAAAGGATAATGAAGGTTGATCTAAGCTTCCCTTCCACCCCTTCTGTTTCTTTAGATGCCAGACATCTGATTAGTCGGCTTCTGGTGAAAGACCCCTCACGAAGGCTCTCTCTTCAGAAGATAATGGAGCATCCTTGGATAGTCAAGAATGCAGATTTTACGGGTATCTGCAAGTAG 852 0.4354 MVSQNPAQEENSKRHWSLQDFEIGKPLGRGKFGRVYVAREVKSKFVVALKVIFKEQIEKYNIHHQLKREMGIQTSLRHPNILRLYGWFHDADRVFLILEYAYNGELYKELRKKGHLTEKQAATYILSLTRALAYCHEKHVIHRDIKPENLLLDHEGRLKIADFGWSVQSRRKRHTMCGTLDYLAPEMVENKAHDYAVDNWTLGILCYEFLYGAPPFEAEGQADTFKRIMKVDLSFPSTPSVSLDARHLISRLLVKDPSRRLSLQKIMEHPWIVKNADFTGICK 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2390 283 SMART serkin_6 21 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu7g2390 283 Gene3D Transferase(Phosphotransferase) domain 1 105 279 - -
Ssu7g2390 283 Gene3D Phosphorylase Kinase; domain 1 8 104 - -
Ssu7g2390 283 ProSitePatterns Protein kinases ATP-binding region signature. 27 54 IPR017441 GO:0005524
Ssu7g2390 283 ProSiteProfiles Protein kinase domain profile. 21 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu7g2390 283 Pfam Protein kinase domain 21 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu7g2390 283 SUPERFAMILY Protein kinase-like (PK-like) 13 275 IPR011009 -
Ssu7g2390 283 PANTHER SERINE/THREONINE-PROTEIN KINASE IAL-RELATED 5 279 IPR030616 GO:0004672
Ssu7g2390 283 PIRSF ILK 1 272 - -
Ssu7g2390 283 CDD STKc_Aurora 20 273 - -
Ssu7g2390 283 ProSitePatterns Serine/Threonine protein kinases active-site signature. 140 152 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2390 Ssu-Chr7 46664932 46667424 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2390 21 275 CBL-interacting serine-threonine protein kinases AT5G10930 41.985 1.61e-64 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Aur Ssu7g2390 Pkinase 1.1e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2390 K08850 - gmx:100800111 543.502