Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2379 ATGGGGAGGAAGGGAAATTGGTTTTCTACTGTGAAGAAAGCTCTAAGCCCCAAGTCAAAGGAGAAGAACGATCAgAAATCAAGTGGATCAAAGAAGAAATGGTTTGGGAAGCAAAAATTGCAGACTTCAGAATTGTACTCAGAAACTGATAAAGCACCTCCTCTTCCTCCACCTGAGATTATTTTAACTCATGTTGAGAGTGAAACCAGCCATGATCACGTTGAAGTTGCAACTGCAGTGAATGCTGAGGAACCTGTTCCCACTGTTCAGACAGCAGCTGCTGAGGTTCAAGCCACTGCAACTGTTCAGTATAACAGTAAACCAAAGGATGAAGTGGCAGCAGTCAGGATTCAAAAAGCCTTTCGGGGATACTTGgcAAGAAGAGCATTGCGGGCTTTAAGGGGGCTGGTCAGGTTGAGATCACTGATGGAAGGGCAGGTGGTAAAACGTCAAGCGATTAGTACCCTACGTTCTATGCAGACTTTTTCTCATTTGCAATCTCAGATTCGTTCTAGGAGGCTGAGGATGTTAGAGGAGAATCAAGCTCTACAAAAACAGCTCTTACAGAAGCACACAAAAGAGCTAGAGAGCATGCAGATTGACGAGGAATGGGATGACAGCATACAATCAAAAGAGCAGGTAGAAGCCAAGTTACTGAGCAAGTATGAGGCGGCTATGAGAAGAGAAAGAGCAATGGCTTATTCATTCTCCCATCAgCAAACCTGGAAGAATTCTTCAAGATCTATAAACCCCATGTTCATGGATCCAACCAATCCAGCCTGGGGTTGGAGCTGGTTGGAACGGTGGACGGCAGCCCGACCTTGGGAGAGCCATAGCCTGGTGGAGAAAGAGAAGAATGACAATTCATCTGTAAGAAGTTCTAGCCGTGGCATTACCAGTGCTGAAATCAGCAAATCATTTGCTAAATTTCAGCTCAATTTTGAGAAGCATTCTCCAACAGCCAGCCAAAATCCAGGCTCACCTAACTTTGAGTCCCATTCAAATCCTCCCAAGACAGCTTCTCCAGCAGTTGCTAAGAAACTGAAGAAAGCAAGTCCAAAGCACATCTTGGCTATTGATGATGACACCAAAAGCATGGTAAGTGTGCAGTCAGAGCGTCCCCGGAGGCACTCCATTGCTGGATCAACAGTGAGAGACGACGAAAGCCTTGCAAGCTCTCCAGCAATTCCAAGTTACATGGTGCCAACTAAATCTGCCAAAGCAAAGTCCAGGATGCAAAGTCCATTAGCTGCAGAGAATGGAACCCCAGATAAATGGTCCTTTGGGACTGCAAAGAAACGTCTTACTTTCCCAGCTTCACCTGCTAGGCCAAGGAGGCATTCAGGTCCACCAAAGGTAGAAAGCAGCTTCAATGCAGAAATCACTGTGGGAAATGGTGTGGCTGGTTGA 1410 0.4582 MGRKGNWFSTVKKALSPKSKEKNDQKSSGSKKKWFGKQKLQTSELYSETDKAPPLPPPEIILTHVESETSHDHVEVATAVNAEEPVPTVQTAAAEVQATATVQYNSKPKDEVAAVRIQKAFRGYLARRALRALRGLVRLRSLMEGQVVKRQAISTLRSMQTFSHLQSQIRSRRLRMLEENQALQKQLLQKHTKELESMQIDEEWDDSIQSKEQVEAKLLSKYEAAMRRERAMAYSFSHQQTWKNSSRSINPMFMDPTNPAWGWSWLERWTAARPWESHSLVEKEKNDNSSVRSSSRGITSAEISKSFAKFQLNFEKHSPTASQNPGSPNFESHSNPPKTASPAVAKKLKKASPKHILAIDDDTKSMVSVQSERPRRHSIAGSTVRDDESLASSPAIPSYMVPTKSAKAKSRMQSPLAAENGTPDKWSFGTAKKRLTFPASPARPRRHSGPPKVESSFNAEITVGNGVAG 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2379 469 PANTHER IQ-DOMAIN 5-RELATED 1 465 - -
Ssu7g2379 469 MobiDBLite consensus disorder prediction 365 469 - -
Ssu7g2379 469 MobiDBLite consensus disorder prediction 1 57 - -
Ssu7g2379 469 Coils Coil 174 194 - -
Ssu7g2379 469 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 1 465 - -
Ssu7g2379 469 MobiDBLite consensus disorder prediction 317 352 - -
Ssu7g2379 469 MobiDBLite consensus disorder prediction 15 31 - -
Ssu7g2379 469 MobiDBLite consensus disorder prediction 317 339 - -
Ssu7g2379 469 SMART iq_5 109 131 IPR000048 GO:0005515
Ssu7g2379 469 Pfam IQ calmodulin-binding motif 113 131 IPR000048 GO:0005515
Ssu7g2379 469 MobiDBLite consensus disorder prediction 34 48 - -
Ssu7g2379 469 Gene3D iswi atpase 107 134 - -
Ssu7g2379 469 ProSiteProfiles IQ motif profile. 110 138 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2379 Ssu-Chr7 46524623 46526965 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2379 1 468 IQD Protein Family AT5G03040 52.282 5.65e-143 416
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2379 - - gmx:100799058 768.459
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g2379 7 46524623 46526965 Ssu7g2379 7 46524623 46526965 ECH
Ssu4g1047 4 16769127 16772276 Ssu7g2379 7 46524623 46526965 PCT