Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2362 ATGGCCGATGCTCCGGCGAGCCCAgtcggcggcggcggcggcagCCACGAGAGCGGCGAGCACAGTCCCCGCTCCAACTTCCGGGAGCAGGATCGGTTCCTCCCTATCGCCAACATCAGCCGCATTATGAAGAAAGCGCTTCCCCCTAACGGGAAAATCGCCAAGGACGCCAAGGAAACCGTGCAGGAATGCGTCTCTGAGTTCATCAGCTTCATCACCAGCGAGGCGAGCGACAAGTGccagaaagagaagagaaagaccATTAACGGCGATGATTTGCTCTGGGCAATGGCCACTCTCGGTTTCGAGGACTATATTGATCCGCTCAAGATTTATCTCGGCGCTTACAGAGagGGTGATTCCAAGGGTTCGGCCAAGGGTGGAGATGTGTCTGCTAAGAAAGATGTTTATCCGAGTCCTAATACCCAGCTTGCTCATCAAGGTTCTTTCTCACAAGGCGTTAATTATACGAATTCTCAGGTAATTACTCTCTCTAATGCAATATATCTCTTTCCTCCTGTGCTTGTGGCGTGGTATTGA 540 0.4741 MADAPASPVGGGGGSHESGEHSPRSNFREQDRFLPIANISRIMKKALPPNGKIAKDAKETVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKIYLGAYREGDSKGSAKGGDVSAKKDVYPSPNTQLAHQGSFSQGVNYTNSQVITLSNAIYLFPPVLVAWY 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2362 179 MobiDBLite consensus disorder prediction 1 30 - -
Ssu7g2362 179 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-2-RELATED 1 161 - -
Ssu7g2362 179 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 33 97 IPR003958 -
Ssu7g2362 179 PRINTS CCAAT-binding transcription factor subunit A signature 99 117 - -
Ssu7g2362 179 PRINTS CCAAT-binding transcription factor subunit A signature 61 79 - -
Ssu7g2362 179 PRINTS CCAAT-binding transcription factor subunit A signature 80 98 - -
Ssu7g2362 179 SUPERFAMILY Histone-fold 30 138 IPR009072 GO:0046982
Ssu7g2362 179 ProSitePatterns NF-YB/HAP3 subunit signature. 64 80 IPR003956 GO:0005634|GO:0006355|GO:0043565
Ssu7g2362 179 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 161 IPR027113 GO:0001228|GO:0006355|GO:0016602
Ssu7g2362 179 Gene3D Histone, subunit A 20 153 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2362 Ssu-Chr7 46344299 46345347 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2362 1 161 CCAAT-HAP3 Transcription Factor Family AT2G37060 72.781 1.64e-75 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Ssu7g2362 CBFD_NFYB_HMF 3.3e-28 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2362 K08065 - gmx:100791435 281.952
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1056 4 16834119 16839278 Ssu7g2362 7 46344299 46345347 PCT