Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2359 ATGGCCGCAGCAGCACGCCCCCTCGTCACCGTGCAGGCCCTCGACGGCGACATGGCCACCGACGCCCCCGCCACCGTCCCCATCCCCGACGTCATGAAGTCTTCCATCCGTCCCGACATCGTCAACTTCGTCCACTCCAACATCTCCAAGAACAGCCGCCAGCCCTACGCCGTGTCCCGCCGCGCCGGCCACCAGACCTCCGCCGAGTCCTGGGGCACCGGCCGCGCCGTCTCCCGAATCCCCCGCGTCCCCGGCGGCGGCACCCACCGCGCCGGCCAGGGAGCCTTCGGCAACATGTGCCGCGGCGGCCGCATGTTCGCCCCCACCAAGATCTGGCGCCGCTGGCACCGCAAAATCAACGTGAACCAGAAGCGCTACGCCGTGGTCTCCGCCATCGCCGCCTCCGCGATCCCGTCCCTCGTCCTCGCCCGCGGCCACCGCATCGAGTCCGTCCCGGAGCTCCCCCTCGTCGTCAGCGACTCCGCCGAGGGCGTGGAGAAGACCAAGGAAGCCATCAGAGTCCTCAGGCAGATCGGCGCCTTCGCCGATGCCGAGAAGGCGAAGGACAGCCACGGCATCCGCCCCGGCAAGGGGAAGATGCGAAACCGTCGCTACATCTCCCGGCTGGGCCCTCTCGTCGTGTACGGAACGGAGGGCGCGAAGGCCGTTAAGGCCTTCCGCAACGTTCCCGGCGTTGAGGTTGCGAACGTTGAGAGGCTTAACCTTTTGAAGCTTGCTCCCGGTGGACACCTTGGGCGGTTTGTGATTTGGACCAAGTCTGCTTTTGAGAAGTTGGACTCTATTTATGGGTCGTTCGATAAGCCCTCGGAGAAGAAGAAGGGCTACTTGCTGCCCAGGCCCAAGATGGTGAACTCGGACCTGTCGAGGATTATTAATTCCGATGAGGTCCAGAGTGTCGTGAGGCCCATCAAGAAGGACGTGAAGCGGGCCACGCTTAAGAAGAACCCGCTCAAGAATCTGAATGCGATGCTGAAGCTGAATCCCTATGCGAAGACTGCTAAGAGGATGGCTCTGCTCGCTGAGGCCCAGCGCGTTACGGCCAAGAAGGAGAAGCTCGATAAGAAGAGGAAGACTGTTTCTAAGGAGGAAGCTTCTGCCATCAAGGCTGCAGGAAAAGCATGGTATCACACTATGGTGTCAGATTCTGATTATACAGAATTTGACAACTTTTCAAAGTGGTTGGGTGTTTCACAGTGA 1218 0.6125 MAAAARPLVTVQALDGDMATDAPATVPIPDVMKSSIRPDIVNFVHSNISKNSRQPYAVSRRAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYAVVSAIAASAIPSLVLARGHRIESVPELPLVVSDSAEGVEKTKEAIRVLRQIGAFADAEKAKDSHGIRPGKGKMRNRRYISRLGPLVVYGTEGAKAVKAFRNVPGVEVANVERLNLLKLAPGGHLGRFVIWTKSAFEKLDSIYGSFDKPSEKKKGYLLPRPKMVNSDLSRIINSDEVQSVVRPIKKDVKRATLKKNPLKNLNAMLKLNPYAKTAKRMALLAEAQRVTAKKEKLDKKRKTVSKEEASAIKAAGKAWYHTMVSDSDYTEFDNFSKWLGVSQ 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2359 405 ProSitePatterns Ribosomal protein L1e signature. 120 146 IPR013000 -
Ssu7g2359 405 Coils Coil 342 369 - -
Ssu7g2359 405 Pfam 60S ribosomal protein L4 C-terminal domain 280 351 IPR025755 -
Ssu7g2359 405 PANTHER 60S RIBOSOMAL PROTEIN L4 2 405 IPR045240 -
Ssu7g2359 405 PANTHER BNAC03G35890D PROTEIN 2 405 - -
Ssu7g2359 405 SUPERFAMILY Ribosomal protein L4 10 267 IPR023574 GO:0003735|GO:0005840|GO:0006412
Ssu7g2359 405 Pfam Ribosomal protein L4/L1 family 27 266 IPR002136 GO:0003735|GO:0005840|GO:0006412
Ssu7g2359 405 MobiDBLite consensus disorder prediction 54 95 - -
Ssu7g2359 405 Gene3D - 3 308 IPR023574 GO:0003735|GO:0005840|GO:0006412
Ssu7g2359 405 MobiDBLite consensus disorder prediction 54 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2359 Ssu-Chr7 46280833 46283091 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2359 2 405 Cytoplasmic Ribosomal Protein Gene Family AT3G09630 83.168 0.0 687
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2359 K02930 - gmx:100779764 767.303
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1059 4 16951916 16953617 Ssu7g2359 7 46280833 46283091 PCT