Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2358 ATGTTCTTTGTGGCGGAGCATGAACTCGAATTCCAGTCAATGGCGGCATCAGCAGCACCCAGTGATGGGTCTGGCAAGAAGGTGAGAAAGCCCTACACCATAACCAAGTCCAGGGAGAGTTGGTCTGAGGAAGAGCACGACAAGTTTCTAGAAGCTCTTCAGCTATTTGACAGGGAttggaagaaaattgaagattttgtAGGTTCAAAAACAGTTATTCAGATTCGAAGCCATGCCCAGAAATACTTCTTGAAAGTCCAAAAGAATGGGACTGTGGCACATGTGCCTCCTCCTCGCCCCAAGCGCAAAGCTGCTCATCCTTACCCTCAAAAGGCATCAAAAAATGTTTTGGTGCCACTACCAGCTTCCATTGGTTATGCTTCTTCAACAAATACCCTTGCACCTGGGTTTGCCACGTGGGATGAAACTTCCCTGCTGATGAATGTCAGAGCCGGTAAATCCATGACCTGTCAGGATGAACTCAACAATCTTTGTCATGGAAATGAAGCTGATATTGGATCAAAGGGGATAACACAGATTACCAACAGCAGTCTTAGTGGTGTTGGAAACTCCACTAGAATGTTACCGACTTCTGAGATACCAAAGCAAGGGAAACAAGCTCCAGTGCTTCATGGTTTGCCAGATTTTGCTGAAGTTTACACTTTCATTGGAAGTGTGTTTGATCCAGATACAAACGACCATGTCCAGAAGCTGAAGGAAATGGATcctataaattttgaaactGTTTTGTTGTTAATGAGAAACCTCACTGTCAACTTGTCTAGCCCTGACTTTGAACCCATCAAGAAGGTATTGTCAACATATGATGTCAATGCCATGGCAGTAGGAATCGATGTCAAGAAGCAGACAAATGATCTATCATGTCAAACCGCTTAA 897 0.427 MFFVAEHELEFQSMAASAAPSDGSGKKVRKPYTITKSRESWSEEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKYFLKVQKNGTVAHVPPPRPKRKAAHPYPQKASKNVLVPLPASIGYASSTNTLAPGFATWDETSLLMNVRAGKSMTCQDELNNLCHGNEADIGSKGITQITNSSLSGVGNSTRMLPTSEIPKQGKQAPVLHGLPDFAEVYTFIGSVFDPDTNDHVQKLKEMDPINFETVLLLMRNLTVNLSSPDFEPIKKVLSTYDVNAMAVGIDVKKQTNDLSCQTA 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2358 298 PANTHER PROTEIN REVEILLE 8 11 290 - -
Ssu7g2358 298 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 33 87 IPR017930 -
Ssu7g2358 298 PANTHER SWI/SNF COMPLEX-RELATED 11 290 - -
Ssu7g2358 298 Gene3D - 41 88 - -
Ssu7g2358 298 ProSiteProfiles SANT domain profile. 36 89 IPR017884 -
Ssu7g2358 298 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 36 85 IPR006447 GO:0003677
Ssu7g2358 298 SMART sant 37 85 IPR001005 -
Ssu7g2358 298 Pfam Myb-like DNA-binding domain 38 83 IPR001005 -
Ssu7g2358 298 ProSiteProfiles Myb-like domain profile. 33 83 IPR001005 -
Ssu7g2358 298 CDD SANT 40 83 IPR001005 -
Ssu7g2358 298 SUPERFAMILY Homeodomain-like 32 88 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2358 Ssu-Chr7 46272775 46278130 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Ssu7g2358 Myb_DNA-binding 1.1e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2358 - - gmx:100797466 525.783
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1060 4 16955771 16959633 Ssu7g2358 7 46272775 46278130 PCT