LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu7g2357	ATGCCGCCTAAGCAGCAATCAAAAGCTGATTTAGCGAAGAAGCAGAAGGTTGTAGAGGACAAAACCTTCGGTCTCAAGAACAAAAACAAGAGCAAAAATGTCCAGAAATACGTCCAGAACCTCAAGCAATCCGTGCAGCCCAAGCCCGATCCCACCAAAGTCGATGCCAAGAAaaagaaggaggaggagaaggcCAAGGAGAAGGAGCTAAATGATTTGTTCAAAATCGCTGTTACTCAGCCTAAAGTGCCAGTTGGTGTTGATCCCAAGTCCATAGTATGTGAGTTTTATAAAGCGGGGCAGTGTGCCAAGGGCTTCAAATGCAAGTTCTCACATGATTTGAATGTTCAGAGGAAAGGGGAAAAGATTGACATTTACAGTGATAAGCGTGACCAGGAAACAATGGAGGATTGGGATCAAGAGACCTTGGAGAAGGTGGTGGAGTCAAAAAAGACCGAGTATAATCAGAATAAACCAACTGACATAGTCTGTAAATACTTTTTGGAAGCAGTAGAAAAGAAGCAATATGGTTGGTTTTGGGTCTGCCCCAATGGTGGTAAAAATTGCCATTATAGACATGCTCTTCCACCTGGTTATGTTTTGAAATCTCAAATGAAGGCTTTGTTAgaggaagaaagtgaaaaaatatcaattgaaGAGGAGATTGAAAAGCagCGTGCCAAAGTGACAACTTTGACTCCTATGACTCCTGAGTTATTCTTtcaatggaagaagaagaagatagaaGAAAGAGATGCCAATTTAGCTGAACAACAGGCAGAGAGGGCTAAGAATGACCGTATGAGTGGTCGGGAGCTATTTTTGTCAAATGCTAGCTTGTTTGTGGATGATGCAGAAGCATATGAAAAGTACCAGAGAGAACTGGAATCTGAAGAAACTGAACAGAATGGGAATGGGAATACTGCTGAAGATGGTCCCAGCACCTCAGCAACAGCTGGTGCTGATGCTGAAGCTCCTGATGACATAGATGATGACGACGATGAGTTGGACATGGATGAGTTAAATGAATTGGAAGCAAGCTTATCCAAGACATCAATCCAAATAAAGGAAACAGGAGCTGAAGCTTAA	1089	0.3976	MPPKQQSKADLAKKQKVVEDKTFGLKNKNKSKNVQKYVQNLKQSVQPKPDPTKVDAKKKKEEEKAKEKELNDLFKIAVTQPKVPVGVDPKSIVCEFYKAGQCAKGFKCKFSHDLNVQRKGEKIDIYSDKRDQETMEDWDQETLEKVVESKKTEYNQNKPTDIVCKYFLEAVEKKQYGWFWVCPNGGKNCHYRHALPPGYVLKSQMKALLEEESEKISIEEEIEKQRAKVTTLTPMTPELFFQWKKKKIEERDANLAEQQAERAKNDRMSGRELFLSNASLFVDDAEAYEKYQRELESEETEQNGNGNTAEDGPSTSATAGADAEAPDDIDDDDDELDMDELNELEASLSKTSIQIKETGAEA	362

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu7g2357	362	Coils	Coil	246	266	-	-
	Ssu7g2357	362	Coils	Coil	53	73	-	-
	Ssu7g2357	362	SUPERFAMILY	CCCH zinc finger	89	113	IPR036855	GO:0046872
	Ssu7g2357	362	ProSiteProfiles	Zinc finger C3H1-type profile.	158	196	IPR000571	GO:0046872
	Ssu7g2357	362	ProSiteProfiles	Zinc finger C3H1-type profile.	88	115	IPR000571	GO:0046872
	Ssu7g2357	362	MobiDBLite	consensus disorder prediction	324	342	-	-
	Ssu7g2357	362	MobiDBLite	consensus disorder prediction	40	64	-	-
	Ssu7g2357	362	PANTHER	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 21	1	361	-	-
	Ssu7g2357	362	Pfam	DRG Family Regulatory Proteins, Tma46	215	298	IPR032378	-
	Ssu7g2357	362	SMART	c3hfinal6	158	195	IPR000571	GO:0046872
	Ssu7g2357	362	SMART	c3hfinal6	88	114	IPR000571	GO:0046872
	Ssu7g2357	362	Coils	Coil	208	228	-	-
	Ssu7g2357	362	Coils	Coil	341	361	-	-
	Ssu7g2357	362	PANTHER	ZINC FINGER-CONTAINING PROTEIN P48ZNF	1	361	-	-
	Ssu7g2357	362	Gene3D	-	87	204	-	-
	Ssu7g2357	362	MobiDBLite	consensus disorder prediction	301	315	-	-
	Ssu7g2357	362	MobiDBLite	consensus disorder prediction	292	362	-	-
	Ssu7g2357	362	Gene3D	-	205	279	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu7g2357	Ssu-Chr7	46227297	46231305	Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C3H	Ssu7g2357		DFRP_C	3.5e-19	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu7g2357	-		-	gmx:100778701	602.823