Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2349 ATGACGAGGGTTGTCCTGATGAGTGTTGATAGCGACAGCAAAGAGGTGAAAGAACTGAGTCAGCGCTTACGAGATGGGAAGAAGATTGCTGGTAGGGAACATGGTTTATGCGAGGGCAATGAAGTGAAATATAATGGAGTAGCTGAAGAAGTTAAGGTTGGACAGGGGGGGACTGTGGAATCCTCCTCTGTCCAGCAGCATATACCCCAGCAACAGCCTCAAGGGGCGATAATTTGTTGGGAGAGGTTTTTGCATATTAGATCCCTTAAGGTCTTGCTTGTGGAAGATGATGACTCTACCCGCCACGTTGTCACTGCACTGCTTCGCAATTGTAGTTATGAAGTTATTGATGCAGCAAACGGATTGCAAGCTTGGAAGATATTGGAGGATTTAACCAATCATATTGATCTCGTTTTAACTGAGGTGGCAATGCCTGGCTTATCAGGGATTGGTCTTCTATACAAGATTATGGGCCACAAAACCCGGAAAAATATTCCGGTAGTTATGATGTCATCTCATGATTCTATGCGTTTAGTCTTTAAGTGTTTGTCAAAGGGTGCTGTGGACTTTCTAGTTAAACCCATACGGAAGAATGAGCTTAAAAACCTGTGGCAGCATGTTTGGAGAAGATGTCACAGTTCTAGTGGGAGTGGCAGTGAAAGTGGCACAGAAACTCAGAAGTCTGTAAAATCAAAGGGTCTTGAGAAGTCTGATAATAATTCTGGAAGCAATGATGAAGATGATAATGGAAGTGTAGGCCTGAATAATGGGGATGGAAGTGACAATGGTAGTGGCGCTCAGAGCTCATGGACCAAACGTGCTGTAGAAGTTGATAGTCCTAAACCAGTCTCCCAGTGGGATCAAATAGCTGAGTGCCCTGACAGTACCTGTGCTCAAGTTGTTCACTCCAATGCTGAAATAGGTGGGAACAAGGTGCTTCCTCTAGCTTCAAAGGAGTGTCCAGAACAGAAGGAACAACTTGATTCACGTATATGCATGTACCTTTATTTTGGGatgatttattgtatttaa 1032 0.4351 MTRVVLMSVDSDSKEVKELSQRLRDGKKIAGREHGLCEGNEVKYNGVAEEVKVGQGGTVESSSVQQHIPQQQPQGAIICWERFLHIRSLKVLLVEDDDSTRHVVTALLRNCSYEVIDAANGLQAWKILEDLTNHIDLVLTEVAMPGLSGIGLLYKIMGHKTRKNIPVVMMSSHDSMRLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSSSGSGSESGTETQKSVKSKGLEKSDNNSGSNDEDDNGSVGLNNGDGSDNGSGAQSSWTKRAVEVDSPKPVSQWDQIAECPDSTCAQVVHSNAEIGGNKVLPLASKECPEQKEQLDSRICMYLYFGMIYCI 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2349 343 SMART REC_2 89 204 IPR001789 GO:0000160
Ssu7g2349 343 PANTHER TWO-COMPONENT RESPONSE REGULATOR-LIKE APRR3 31 327 - -
Ssu7g2349 343 SUPERFAMILY CheY-like 87 213 IPR011006 -
Ssu7g2349 343 MobiDBLite consensus disorder prediction 244 274 - -
Ssu7g2349 343 MobiDBLite consensus disorder prediction 213 278 - -
Ssu7g2349 343 ProSiteProfiles Response regulatory domain profile. 90 208 IPR001789 GO:0000160
Ssu7g2349 343 PANTHER TWO-COMPONENT RESPONSE REGULATOR 31 327 IPR045279 GO:0009736
Ssu7g2349 343 MobiDBLite consensus disorder prediction 213 228 - -
Ssu7g2349 343 Pfam Response regulator receiver domain 91 202 IPR001789 GO:0000160
Ssu7g2349 343 MobiDBLite consensus disorder prediction 229 243 - -
Ssu7g2349 343 Gene3D - 88 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2349 Ssu-Chr7 46125479 46153182 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2349 61 327 Response Regulator Gene Family AT5G60100 60.148 2.78e-91 277
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Ssu7g2349 Response_reg 6.7e-23 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2349 K12129 - gmx:100796933 535.798