Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2348 ATGGTCAACTATATCAATGGGGTTCCAGTCAAAACTGCAGGTTCTAAGCATAGCAACGCACTTGATGTCGGCCCCTCTAAATTCAATGAGCAAATTAATAGAGGACAACTGGACCTTAATTGTGAAAATCAATCTAGCAAGCTAAGATGCAAAGGTTTATCATTGTCTGATACCATTACTAGCACTTCTGATTCTCAGATGCATAGTGGAGAATTTGAAGCCCTAAATAAAAGACCCAACTCCTCAGATATTGAAATTAAAGGTACTAATAATGATGAAGAATTTCCATCTCTTGAGCTCAGTTTAAAGAGGCTTAGAGGAGTTAAAGAAGCTGGTATTACAATTCAGGATGAACGGAATGTTTTAAGACGTTCTGATCAGTCTGCTTTCTCAAGGTACAATGCAGCCTCTAACACTAAGAAGTCTCGCATTGGATGTGTTGGAAGCAATTCTCCATATAATAATAGCTCGGAAGTTACAAAGAAAGATTCATCTCGTGATATTCAATCTCATTCTAGTGGCAATCCTCCTAACCAAAACTCAAATGGTGCTAGCAATAACATTGATATGGGTTCCACTACTAATAATGCTTATGCTAAATCTGCAGTTATAAGTGAGCCAGCAGTGGCATCAATAACTAAATGTTTGTACCAAACATCTTTCCAGCCTATAAAAAACAACCTTGTTTGTTCCTCTCAACAAGTTGTCTTACATAATACTGAAGATATGACAGCAACAATGCTGGCACCACCTAAAGTGGACAGACATAAAGATTCTGCAACTCAGGACTTCCATCACCATTATGAAAACCATAACTGTATTGCTGACAACATGCAGCACCAGCTGCCACCTGATCATGATGCTGAATCTGTAAAGAAAATGGCTACTGCTGCTCCACATTGTGGGTCATCAAATGTGGTTGAAGTGCTAGTTGAAGGTAATGTTGGAAACCACAGTATCAATAGAAGTGCTTCAGGCAGCAACAATGGAAACAATGGACAAAATGGAAGCAGCACAGCAGTTAATTCTGGAGGGACAAACATAGAAAGCAACAATAGACTCACTGGGAATAGTGGCAGTGGTGATGCTAGCAGAAGTGGAAGTGCCAACAGAGTAGATCAAAACAAGACTTCTCAAAGGGAAGCAGCCTTGACTAGATTTCgccaaaagagaaaagagagaaaggagacgGGCTTTCATAGAAAGGTTCGATATCAGAGCAGGAAGAAATTAGCTGAACAACGACCTCGATTTCATGGACAATTTGTGCGACAGTCCTCTAACGAAAGTGCGATATTAGATGCGTTTGCTTTCATTTTCCGACAAATGAATTCGAAGATTCGACTGAGAAGAAAACTTAGTCAACTGTTAGATATCGCTGCGAATTCTTTTGGAAATCTGTAA 1404 0.3868 MVNYINGVPVKTAGSKHSNALDVGPSKFNEQINRGQLDLNCENQSSKLRCKGLSLSDTITSTSDSQMHSGEFEALNKRPNSSDIEIKGTNNDEEFPSLELSLKRLRGVKEAGITIQDERNVLRRSDQSAFSRYNAASNTKKSRIGCVGSNSPYNNSSEVTKKDSSRDIQSHSSGNPPNQNSNGASNNIDMGSTTNNAYAKSAVISEPAVASITKCLYQTSFQPIKNNLVCSSQQVVLHNTEDMTATMLAPPKVDRHKDSATQDFHHHYENHNCIADNMQHQLPPDHDAESVKKMATAAPHCGSSNVVEVLVEGNVGNHSINRSASGSNNGNNGQNGSSTAVNSGGTNIESNNRLTGNSGSGDASRSGSANRVDQNKTSQREAALTRFRQKRKERKETGFHRKVRYQSRKKLAEQRPRFHGQFVRQSSNESAILDAFAFIFRQMNSKIRLRRKLSQLLDIAANSFGNL 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2348 467 MobiDBLite consensus disorder prediction 144 192 - -
Ssu7g2348 467 ProSiteProfiles CCT domain profile. 383 425 IPR010402 GO:0005515
Ssu7g2348 467 MobiDBLite consensus disorder prediction 144 159 - -
Ssu7g2348 467 MobiDBLite consensus disorder prediction 169 192 - -
Ssu7g2348 467 PANTHER TWO-COMPONENT RESPONSE REGULATOR 12 412 IPR045279 GO:0009736
Ssu7g2348 467 Pfam CCT motif 380 425 IPR010402 GO:0005515
Ssu7g2348 467 MobiDBLite consensus disorder prediction 318 381 - -
Ssu7g2348 467 PANTHER TWO-COMPONENT RESPONSE REGULATOR-LIKE PRR37 12 412 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2348 Ssu-Chr7 46110955 46125428 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2348 11 427 Response Regulator Gene Family AT5G02810 37.838 2.85e-51 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Ssu7g2348 CCT 7.2e-13 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2348 K12129 - gmx:100806454 684.485