Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2347 atggGTTGGATTCCCTGTTCTGGAAGTTCAAACCCTAAGAAGAAGTTAAAGAAGAAGTTGGAGAAGATGGAAGTTGATCCGATCAAAGCCGCCCCAGGGAAATTGAAGAGGAATTCATCCATGAATTCCAAAGATTCCTCTAAAAATGGAAACCCTGATCACATTGCTGCACAGACATTCTCATTTCGTGAGTTGGCTACTGCAACTAGAAacttcagagctgaatgtcttTTAGGTGAGGGAGGCTTTGGCAGAGTATACAAGGGGCGTTTGGAAAATATTAATCAGACTGTTGCAATTAAACAACTTGACCGAAATGGGCTACAAGGGAATAGAGAATTCCTTGTTGAAGTGTTGATGTTAAGTCTTCTTCACCACCCTAACCTTGTCAACTTGATTGGTTATTGTGCTGATGGGGATCAAAGGCTTCTAGTTTATGAATTTATGTCATTAGGATCGTTGGAAGACCACTTACATGATATTTCTCCTGGCAAGAAACGACTTGACTGGAACACACGAATGAAAATAGCTGCTGGGGCAGCAAGGGGATTGGAATATCTACATGACAAAGCTAATCCTCCTGTCATATACCGAGATTTAAAGTGCTCCAACATTTTGCTTGGTGAAGGATATCATCCAAAGTTATCTGATTTTGGTCTGGCTAAACTTGGTCCAGTGGGGGAAAACACCCATGTATCAACAAGGGTTATGGGCACCTATGGATATTGTGCTCCAGAGTATGCAATGACAGGTCAACTGACTCTGAAATCAGATGTTTATAGCTTTGGTGTTGTTCTTCTGGAAATAATTACTGGAAGGAAAGCGATTGACAATTCAAAATCTGCAGGAGAGCAGAATCTTGTTGCATGGGCCAGACCACTTTTCAaagatcaaagaaaattttcGCAAATGGCTGATCCAATGCTCCAAGGTCAATATCCTCCGAGAGGGCTATACCAGGCCCTTGCTGTTGCAGCAATGTGTGTTCAGGAGCAGGCCAATATGCGTCCAGTTATAGCTGATGTTGTCACAGCTTTGAGTTACCTTGCTTCACAAAAATATGACCCCAACACACAGACAGTACAAAGCTCTCGCCTTACTCCCGGTACTCCTCCTAGAACCAAGAGGGGGCAGTGA 1137 0.4169 MGWIPCSGSSNPKKKLKKKLEKMEVDPIKAAPGKLKRNSSMNSKDSSKNGNPDHIAAQTFSFRELATATRNFRAECLLGEGGFGRVYKGRLENINQTVAIKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMSLGSLEDHLHDISPGKKRLDWNTRMKIAAGAARGLEYLHDKANPPVIYRDLKCSNILLGEGYHPKLSDFGLAKLGPVGENTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVLLEIITGRKAIDNSKSAGEQNLVAWARPLFKDQRKFSQMADPMLQGQYPPRGLYQALAVAAMCVQEQANMRPVIADVVTALSYLASQKYDPNTQTVQSSRLTPGTPPRTKRGQ 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2347 378 Gene3D Phosphorylase Kinase; domain 1 56 148 - -
Ssu7g2347 378 SUPERFAMILY Protein kinase-like (PK-like) 53 346 IPR011009 -
Ssu7g2347 378 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL7-RELATED 1 376 - -
Ssu7g2347 378 MobiDBLite consensus disorder prediction 357 378 - -
Ssu7g2347 378 MobiDBLite consensus disorder prediction 17 31 - -
Ssu7g2347 378 CDD STKc_IRAK 78 346 - -
Ssu7g2347 378 PANTHER OS07G0668900 PROTEIN 1 376 - -
Ssu7g2347 378 ProSiteProfiles Protein kinase domain profile. 72 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu7g2347 378 MobiDBLite consensus disorder prediction 1 53 - -
Ssu7g2347 378 MobiDBLite consensus disorder prediction 36 53 - -
Ssu7g2347 378 SMART serkin_6 72 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu7g2347 378 Gene3D Transferase(Phosphotransferase) domain 1 149 367 - -
Ssu7g2347 378 MobiDBLite consensus disorder prediction 357 371 - -
Ssu7g2347 378 Pfam Protein tyrosine and serine/threonine kinase 76 345 IPR001245 GO:0004672|GO:0006468
Ssu7g2347 378 ProSitePatterns Protein kinases ATP-binding region signature. 78 101 IPR017441 GO:0005524
Ssu7g2347 378 ProSitePatterns Serine/Threonine protein kinases active-site signature. 195 207 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2347 Ssu-Chr7 46094717 46098344 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2347 26 351 Glycoside Hydrolase AT3G07070 67.485 6.05e-165 466
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Ssu7g2347 PK_Tyr_Ser-Thr 3.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2347 - - gmx:100776041 726.857
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1069 4 17046925 17049853 Ssu7g2347 7 46094717 46098344 PCT