Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2343 ATGATGGTTAGATCCTGTTGGAAACCAATTGCTGATGGTGATGAAGGAGATGGAAGTGGGCGAGTTGATGGACTTCTATGGTACAAGGATTTGGGGAACCATCTTTATGGGGAATTCTCGATGGCTGTGGTTCAGGCCAATAGTTCATTAGAGGATCGAAGTGAACTTGAGTCTGGACCCTTGAGTTCCAACCACTTAGGTCCTCAAGGGACCTTTGTAGGTGTTTATGATGGCCATGGTGGAAGCGAGGCCTCACAATTTGTTAGTGACAATCTCTTCTGCAATCTCAAAAGGCTTGCAGCTGAACATCAAGGTATGTCAGAAAGTCTCATCAAAAGGGCATATTCAGCAACAGAGGAGGGTTTTCTGTCTCTTGTGAAGAAACAGTGGCTGAGCAAGCCACAGATTGCATCCACCGGTACTTGTTGCTTGGTGGGGGTAATTTGCAATGGCATGCTATATATTGCAAATTCTGGGGACTCCCGGGTGGTGTTAGGAAGATTTGAGAGAGCAACAAGGGAAACAGAAGCTATACAATTATCTACAGAACACAATGTTAACCAAGAAACAGTGAGAGATGAACTTCGGTCAAAGCACCCCTTTGATTCACAAATCGTGGTTATGAGACAAAACGTTTGGCGTGTGAAAGGCCTCATACAGGTTTCACGATCCATAGGGGATGCATATCTGAAGAAAGCAGAATTTAATAGGGAGCCTCTACCATCCAAGTTTAGACTAGCAGAAACATTCTTCAAGCCAATTCTTAGTTGTGAGCCATCGACATCATCCCACACACTCCAGCCTGACGATCAATTTCTCATATTTGCTTCTGATGGTTTATGGGAGCATCTTACCAACCAAGAGGCTGTTAACATAGTCAGCAATAACCCACCTAACGGAATTGCCAGAAGACTGGTGAAAGCTGCACTTCGAGAAGCGGCTAAGAAGTGTGACATGAGACTTTCTGACCTCCAAAAGATTGAGCAAGGGATGAGGAGACACATCCATGATGATATAACAGTGATTGTGGTGTTTCTAAATCCCAAACTCACTGATAATACCTCTCTCTGTGCTTCTCCTCTTTCAATCAAGGGAGGTGGGTCGTCTGCCAATTCCTAG 1119 0.4459 MMVRSCWKPIADGDEGDGSGRVDGLLWYKDLGNHLYGEFSMAVVQANSSLEDRSELESGPLSSNHLGPQGTFVGVYDGHGGSEASQFVSDNLFCNLKRLAAEHQGMSESLIKRAYSATEEGFLSLVKKQWLSKPQIASTGTCCLVGVICNGMLYIANSGDSRVVLGRFERATRETEAIQLSTEHNVNQETVRDELRSKHPFDSQIVVMRQNVWRVKGLIQVSRSIGDAYLKKAEFNREPLPSKFRLAETFFKPILSCEPSTSSHTLQPDDQFLIFASDGLWEHLTNQEAVNIVSNNPPNGIARRLVKAALREAAKKCDMRLSDLQKIEQGMRRHIHDDITVIVVFLNPKLTDNTSLCASPLSIKGGGSSANS 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2343 372 ProSiteProfiles PPM-type phosphatase domain profile. 35 346 IPR001932 -
Ssu7g2343 372 CDD PP2Cc 36 346 IPR001932 -
Ssu7g2343 372 PANTHER SERINE/THREONINE PHOSPHATASE FAMILY, 2C DOMAIN PROTEIN 3 369 - -
Ssu7g2343 372 SUPERFAMILY PP2C-like 48 347 IPR036457 -
Ssu7g2343 372 SMART PP2C_4 32 344 IPR001932 -
Ssu7g2343 372 Pfam Protein phosphatase 2C 57 315 IPR001932 -
Ssu7g2343 372 ProSitePatterns PPM-type phosphatase domain signature. 72 80 IPR000222 GO:0043169
Ssu7g2343 372 Gene3D - 29 355 IPR036457 -
Ssu7g2343 372 PANTHER ALPHABET, ISOFORM E-RELATED 3 369 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2343 Ssu-Chr7 46007518 46009277 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2343 2 370 PP2C-type Phosphatase Gene Family AT3G12620 64.247 6.86e-179 500
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2343 K01102 - gmx:100819870 714.146
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1076 4 17123575 17125740 Ssu7g2343 7 46007518 46009277 PCT