Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2341 ATGGAAGAAACAACATCAACCATCATGGCTGCACTCTCCACCCTCACTCCTTCTCAGTTCTCAGATCTGACCCACTCCATTGTCTCCGCcacccaccaccaccatcgccgcCTCGCCACCCTCCTCTCTTCCCCGACTCTCTTCTCTCTGACCCTCCACCACCTCCACACCCTCTCCCTCCCCCGAAAGACCCTCCTCATCGCCCGCCACCTCCTCTCCTCCCTCCACCTCCTCGCCGCCACGTCGCCGCCGCTGTCCTCCTCCACGCGGCAGCGCGACCTCGACGCCGCGCTCCTCCTCCTCCTGCTCTGCGAAACACACAATCGCAACCCGGAGGCCCTCGAGGCACCCTTTTCCGAATGGAGGGTCAACCTCAGCAGCCTCTTCTCTGAATCAATGCTGACGCTTTCTTTGGCACCCGTTGGGACGGCTCTGATTCCCTTCGTTGAGACGGTGACGCGGTGCTGGAGACTCGTGGGCGCGCTGGACTGCGGCGGCGGAGGAGGGAAGGAGGTGGGGGAGGTGGCGGCGTCGGCGGCGACGGTGGTGGCGCTGCCATCGGTGGAGGTGAGGGTCGGTGGGAGAGAGTGTGTGATATGCAGGGAGGAGATGAGAACCGGGAGGGACGTGTGTGAGTTGCCATGCCAGCACTCGTTTCATTGGATGTGTATTTTGCCGTGGCTGGGAAAGAGGAACACGTGTCCTTGCTGCAGGTTTCGGTTACCGTCCGATGATGTCTTTGGGGAGATCCAACGGCTGTGGGAAGTCTTGGTTAAAATGGGTGCAAAAGAATAG 795 0.5925 MEETTSTIMAALSTLTPSQFSDLTHSIVSATHHHHRRLATLLSSPTLFSLTLHHLHTLSLPRKTLLIARHLLSSLHLLAATSPPLSSSTRQRDLDAALLLLLLCETHNRNPEALEAPFSEWRVNLSSLFSESMLTLSLAPVGTALIPFVETVTRCWRLVGALDCGGGGGKEVGEVAASAATVVALPSVEVRVGGRECVICREEMRTGRDVCELPCQHSFHWMCILPWLGKRNTCPCCRFRLPSDDVFGEIQRLWEVLVKMGAKE 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2341 264 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SGR9, AMYLOPLASTIC 2 261 - -
Ssu7g2341 264 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 2 261 - -
Ssu7g2341 264 ProSiteProfiles Zinc finger RING-type profile. 197 238 IPR001841 -
Ssu7g2341 264 SUPERFAMILY RING/U-box 193 243 - -
Ssu7g2341 264 Pfam Ring finger domain 196 238 IPR001841 -
Ssu7g2341 264 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 170 244 IPR013083 -
Ssu7g2341 264 SMART ring_2 197 237 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2341 Ssu-Chr7 45977210 45978004 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2341 2 259 C3H Transcription Factor Family AT5G02750 52.347 5.35e-81 243
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2341 - - pvu:PHAVU_007G161400g 368.622