Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2330 ATGGGTAACGCTCATGGACAGCGGCACGGGCATCGCAAACACCGTAATTCCGTCCCTCACAACACCGTTCCTCCTTCCCATAAATACGATCCTCAGCCACCAGCCCCCTCCAATTCCAACATGCCCTCTCTGCCTTACGCCCACGTCGACTCCACCCTCCGCGCCCTCGCCGCCCAAGCCGAGGGCTTCGGCCGCTTCGCCGTCGGTGGCCTCCACGGTCCCCTTTGCCACGTCACATCTCTCGcagATGACGGACCGGGGTCACTGCGTGACGCGTGTCGCAGAAAAGAACCTCTGTGGATCGTGTTTGAGGTTTCCGGCACCATTCATCTCTCCTCGTACTTGAGTGTGTCATCTCACAAGACCATCGATGGTCGTGGCCAGAGGATTAAGCTCAGCGGAAAAGGTTTGCGGCTGAAGGAATGCGAACACGTGATAATTTGCAATTTGGAGTTTGAAGGCGGCAGAGGGCATGATGTTGATGCCATTCAGATTAAACCTAATTCCAAACACATATGGATAGACCGTTGCACGCTTAGTGATTTTGATGATGGGCTTATAGATATCACCCGAGAAAGCACAGATATTACTATTTCGAGGTGTCACTTCTCTCAGCATGACAAAACCATGCTCATTGGGGCTGATCCCTCGCATGTTGGCGATAGGTGCATGAGGGTCACTATACACCATTGTTTTTTCAATGGGACTCGACAGAGGCACCCTCGTGTTAGGTTTGCGAAAGTGCATATGTACAATAATTATATCAGAAACTGGGGCATATATGCTGTTTGTGCTAGCGTGGAATCCCAGATATTCTCGCAACATAATATCTATGAAGCAGGACAGAAGAAGGTGGCATTTAAGTACCTTACCGAGAAGGCAGCAGACAAGGACGTGGAAGCAACTGGTCACATAAGATCTGAAGGAGACCTATTTTTAAATGGTGCTCAACCAGGGTTAATGACTGAGGATGTTGGGTGCAACATGTTTCACCCCAGTGAACACTATCCCTCGTGGACAGTGGAAGCCCCTACAGACGATCTAAAACAGATTGTTCATCACTGCACTGGATGGCAGTCTGTTGCTAGGCCTGCAGATCAAACAGTATGCACACAATAG 1119 0.4996 MGNAHGQRHGHRKHRNSVPHNTVPPSHKYDPQPPAPSNSNMPSLPYAHVDSTLRALAAQAEGFGRFAVGGLHGPLCHVTSLADDGPGSLRDACRRKEPLWIVFEVSGTIHLSSYLSVSSHKTIDGRGQRIKLSGKGLRLKECEHVIICNLEFEGGRGHDVDAIQIKPNSKHIWIDRCTLSDFDDGLIDITRESTDITISRCHFSQHDKTMLIGADPSHVGDRCMRVTIHHCFFNGTRQRHPRVRFAKVHMYNNYIRNWGIYAVCASVESQIFSQHNIYEAGQKKVAFKYLTEKAADKDVEATGHIRSEGDLFLNGAQPGLMTEDVGCNMFHPSEHYPSWTVEAPTDDLKQIVHHCTGWQSVARPADQTVCTQ 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2330 372 Gene3D - 46 356 IPR012334 -
Ssu7g2330 372 PANTHER PECTATE LYASE 18-RELATED 38 364 IPR045032 GO:0030570
Ssu7g2330 372 SMART amb_all 86 284 IPR002022 -
Ssu7g2330 372 PRINTS Pollen allergen Amb family signature 114 130 IPR018082 -
Ssu7g2330 372 PRINTS Pollen allergen Amb family signature 261 280 IPR018082 -
Ssu7g2330 372 PRINTS Pollen allergen Amb family signature 59 76 IPR018082 -
Ssu7g2330 372 SUPERFAMILY Pectin lyase-like 59 366 IPR011050 -
Ssu7g2330 372 MobiDBLite consensus disorder prediction 26 40 - -
Ssu7g2330 372 MobiDBLite consensus disorder prediction 1 18 - -
Ssu7g2330 372 PANTHER PECTATE LYASE 38 364 - -
Ssu7g2330 372 MobiDBLite consensus disorder prediction 1 45 - -
Ssu7g2330 372 Pfam Pectate lyase 115 277 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2330 Ssu-Chr7 45782264 45784613 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2330 81 369 Polysaccharide Lyase AT3G55140 76.471 8.76e-172 479
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2330 K01728 - gmx:100814368 698.353