Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2323 ATGGTAGCCATGATGAAGAGACAGCGAGAAAGCGAATCAGAAGAGAGCATAGATTTGGCGAAGAGTCTGATACTACTCTCGCATGCCCAACAAAGCAAACCCCTGCTGAAAAGTTTTGCCCCACTGGAGTTCGAGTGCAAAACCTGTAACCGCAAGTTCTCATCGTTTCAGGCCCTTGGTGGCCACAGGGCTAGTCACAAGAAGCCCAAGTTCGACGGAGAAGAACTCAAAGCAGAGGGCAAGGCTCTGAGTTTGGGGAACAAACCCAAAATGCACGAGTGTTCCATTTGTGGCCAGGAATTCTCTTTGGGCCAGGCTCTGGGAGGTCACATGAGAAAGCATAGGGGTGCCGTCAGTGACAACAATGAAGGGTTTTCTTCTATAAACCAAGCTATTGCGAAAGCCCGAGTTCTGAAACGATCGAATAGCAAGAGGGTCATGTGCTTGGAGATGGACCTGAACTTAACGCCTTTGGAAAATGACTTGAAGTTGTTGTTCGGAAACAAGGCACCTAGAGTCGATCTTTCTTTGTAG 534 0.4831 MVAMMKRQRESESEESIDLAKSLILLSHAQQSKPLLKSFAPLEFECKTCNRKFSSFQALGGHRASHKKPKFDGEELKAEGKALSLGNKPKMHECSICGQEFSLGQALGGHMRKHRGAVSDNNEGFSSINQAIAKARVLKRSNSKRVMCLEMDLNLTPLENDLKLLFGNKAPRVDLSL 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2323 177 SUPERFAMILY beta-beta-alpha zinc fingers 44 114 IPR036236 -
Ssu7g2323 177 ProSitePatterns Zinc finger C2H2 type domain signature. 94 114 IPR013087 -
Ssu7g2323 177 ProSiteProfiles Zinc finger C2H2 type domain profile. 44 71 IPR013087 -
Ssu7g2323 177 ProSiteProfiles Zinc finger C2H2 type domain profile. 92 119 IPR013087 -
Ssu7g2323 177 SMART c2h2final6 92 114 IPR013087 -
Ssu7g2323 177 SMART c2h2final6 44 66 IPR013087 -
Ssu7g2323 177 ProSitePatterns Zinc finger C2H2 type domain signature. 46 66 IPR013087 -
Ssu7g2323 177 Pfam C2H2-type zinc finger 92 116 - -
Ssu7g2323 177 Pfam C2H2-type zinc finger 44 69 - -
Ssu7g2323 177 Gene3D Classic Zinc Finger 41 114 - -
Ssu7g2323 177 PANTHER ZINC FINGER PROTEIN ZAT5 5 172 - -
Ssu7g2323 177 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 5 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2323 Ssu-Chr7 45561175 45561708 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2323 5 175 C2H2 Transcription Factor Family AT2G37430 48.619 2.41e-44 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ssu7g2323 zf-C2H2_6 2.3e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2323 - - aprc:113870747 285.804
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1106 4 17576773 17577255 Ssu7g2323 7 45561175 45561708 PCT